FC871836

Overview
NameFC871836
Unique NameFC871836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_RHILO (ATP synthase gamma chain OS=Rhizobium loti GN=atpG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.971e-19
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 1
Query:   46 GEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            GEIL +L     S  +F A+LENA  E GA+MSAMD+++RNAGEM+++L++TYNR RQA IT ELIEIISGA AL
Sbjct:  220 GEILSDLIPRNISVQVFRALLENAAGEMGAKMSAMDNATRNAGEMINKLSITYNRQRQAQITKELIEIISGAEAL 294          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_RHIME (ATP synthase gamma chain OS=Rhizobium meliloti GN=atpG PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.104e-19
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 1
Query:    4 GELDSYEIEGGET-------KGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            GE+ + E EG           G IL +L     S  +F A+LEN   E GA+MSAMD+++RNAGEM+D+LTL+YNR RQA IT ELIEIISGA AL
Sbjct:  199 GEVAAAEGEGASAIYEYEPEAGAILSDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMIDKLTLSYNRQRQAQITKELIEIISGAEAL 294          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_METPB (ATP synthase gamma chain OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=atpG PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.104e-19
Identity = 49/73 (67.12%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   52 ILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            IL+ L     +  +F A+LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:  223 ILETLLPKNLTVQVFRALLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 295          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_METEP (ATP synthase gamma chain OS=Methylobacterium extorquens (strain PA1) GN=atpG PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.104e-19
Identity = 49/73 (67.12%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   52 ILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            IL+ L     +  +F A+LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:  224 ILETLLPKNLTVQIFRALLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 296          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_METC4 (ATP synthase gamma chain OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=atpG PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.104e-19
Identity = 49/73 (67.12%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   52 ILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            IL+ L     +  +F A+LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:  224 ILETLLPKNLTVQIFRALLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 296          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_SPHWW (ATP synthase gamma chain OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpG PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.189e-18
Identity = 46/73 (63.01%), Postives = 60/73 (82.19%), Query Frame = 1
Query:   52 ILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            IL  L     +  +F A+LENA SEQG+RM+AMD+++RNAGEM+++LT+ YNRTRQA+ITTELIEII+GA AL
Sbjct:  222 ILTELLPRNVAVQLFRAMLENAASEQGSRMTAMDNATRNAGEMINKLTIQYNRTRQAAITTELIEIIAGAEAL 294          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_PARDP (ATP synthase gamma chain OS=Paracoccus denitrificans (strain Pd 1222) GN=atpG PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.189e-18
Identity = 51/89 (57.30%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    4 GELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            G    Y+ E  E    IL +L     +  +F A+LENA SEQGARM+AMD+++RNAG+M+DRLT  YNR+RQA+IT ELIEIISGA AL
Sbjct:  204 GASSLYDYEPDENA--ILNDLLPRSVATQVFAALLENAASEQGARMTAMDNATRNAGDMIDRLTTVYNRSRQAAITKELIEIISGAEAL 290          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_SPHAL (ATP synthase gamma chain OS=Sphingopyxis alaskensis GN=atpG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.553e-18
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 1
Query:   22 EIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            E E GE   EIL +L     +  +F  +LENA SEQGA M+AMD+++RNAGE++++LT+ YNRTRQA+ITTELIEII+GA AL
Sbjct:  211 EYEPGEE--EILADLLPRNVTIQIFKGLLENAASEQGASMTAMDNATRNAGELINKLTIIYNRTRQAAITTELIEIIAGAEAL 291          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_RHOS5 (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpG PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.649e-18
Identity = 51/90 (56.67%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    4 GELDS-YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            GE++S Y+ E  E    +L +L     +  +F A+LEN  SEQGARMSAMD+++RNAG+M++RLT+ YNR+RQA+IT ELIEIISGA AL
Sbjct:  202 GEVNSLYDYEPSEEG--VLADLLPRGVATQIFTALLENGASEQGARMSAMDNATRNAGDMINRLTIQYNRSRQAAITKELIEIISGAEAL 289          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_MACFA (ATP synthase subunit gamma, mitochondrial OS=Macaca fascicularis GN=ATP5C1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.649e-18
Identity = 43/75 (57.33%), Postives = 63/75 (84.00%), Query Frame = 1
Query:   49 EILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 273
            ++LQN  E+  + +++ ++ E++ SEQ ARM+AMD++S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct:  224 DVLQNYQEYNLANIIYYSLKESSTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298          
The following BLAST results are available for this feature:
BLAST of FC871836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
ATPG_RHILO6.971e-1962.67ATP synthase gamma chain OS=Rhizobium loti GN=atpG... [more]
ATPG_RHIME9.104e-1954.17ATP synthase gamma chain OS=Rhizobium meliloti GN=... [more]
ATPG_METPB9.104e-1967.12ATP synthase gamma chain OS=Methylobacterium popul... [more]
ATPG_METEP9.104e-1967.12ATP synthase gamma chain OS=Methylobacterium extor... [more]
ATPG_METC49.104e-1967.12ATP synthase gamma chain OS=Methylobacterium chlor... [more]
ATPG_SPHWW1.189e-1863.01ATP synthase gamma chain OS=Sphingomonas wittichii... [more]
ATPG_PARDP1.189e-1857.30ATP synthase gamma chain OS=Paracoccus denitrifica... [more]
ATPG_SPHAL1.553e-1859.04ATP synthase gamma chain OS=Sphingopyxis alaskensi... [more]
ATPG_RHOS52.649e-1856.67ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]
ATPG_MACFA2.649e-1857.33ATP synthase subunit gamma, mitochondrial OS=Macac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DD06FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871836 ID=FC871836; Name=FC871836; organism=Citrus sinensis; type=EST; length=495bp
CTTGGTGAGCTAGACTCCTATGAAATTGAAGGCGGTGAAACAAAGGGTGA
AATACTTCAAAATCTGGCTGAGTTCCAATTCTCTTGTGTCATGTTCAATG
CGGTGTTGGAGAATGCCTGCAGTGAGCAAGGGGCAAGGATGTCTGCCATG
GATAGCTCAAGCAGAAATGCAGGAGAAATGCTTGATCGCCTCACTCTTAC
TTATAACAGAACTCGTCAAGCATCTATCACCACCGAGTTGATTGAGATTA
TATCTGGAGCATCAGCACTGGAAGGCTGATTACAAAAGCGACAGTGCTCA
CTTTTCTTGACAGTGACGAAATAAATCCTTGGTGGAGGCTTTGTTCAAAC
TTCAATGTGGTACTTTCATAAGAGTTTTTGTTGAGCTACTCCAATAATCT
CTCCAGTGTTAAAACTTGGGGAATTAACAATTATACTTGCGATATTTTCA
ATATAGTTTTTGATTCTCAATTAAAAAAAAAAAAAAAAAAAAAAA
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