FC871836

Overview
NameFC871836
Unique NameFC871836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_SILPO (ATP synthase gamma chain OS=Silicibacter pomeroyi GN=atpG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.459e-18
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    4 GELDSYEIEGGETKGE-ILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            GE D   +   E   E IL +L     +  +F+A+LEN  SEQGARMSAMD+++RNAGEM+D+LT+ +NR+RQA IT ELIEIISGA AL
Sbjct:  202 GESDEVALFDYEPSEEAILADLLPRGVATQIFSALLENGASEQGARMSAMDNATRNAGEMIDKLTIEFNRSRQAVITNELIEIISGAEAL 291          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_RHOSK (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=atpG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.459e-18
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    4 GELDS-YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            GE+ S Y+ E  E    +L +L     +  +F A+LEN  SEQGARMSAMD+++RNAG+M++RLT+ YNR+RQA+IT ELIEIISGA AL
Sbjct:  202 GEVSSLYDYEPSEEG--VLADLLPRGVATQIFTALLENGASEQGARMSAMDNATRNAGDMINRLTIEYNRSRQAAITKELIEIISGAEAL 289          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_RHOS4 (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=atpG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.459e-18
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    4 GELDS-YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            GE+ S Y+ E  E    +L +L     +  +F A+LEN  SEQGARMSAMD+++RNAG+M++RLT+ YNR+RQA+IT ELIEIISGA AL
Sbjct:  202 GEVSSLYDYEPSEEG--VLADLLPRGVATQIFTALLENGASEQGARMSAMDNATRNAGDMINRLTIEYNRSRQAAITKELIEIISGAEAL 289          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_RHOS1 (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.459e-18
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    4 GELDS-YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            GE+ S Y+ E  E    +L +L     +  +F A+LEN  SEQGARMSAMD+++RNAG+M++RLT+ YNR+RQA+IT ELIEIISGA AL
Sbjct:  202 GEVSSLYDYEPSEEG--VLADLLPRGVATQIFTALLENGASEQGARMSAMDNATRNAGDMINRLTIEYNRSRQAAITKELIEIISGAEAL 289          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_HUMAN (ATP synthase subunit gamma, mitochondrial OS=Homo sapiens GN=ATP5C1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.459e-18
Identity = 43/75 (57.33%), Postives = 62/75 (82.67%), Query Frame = 1
Query:   49 EILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 273
            ++LQN  E+  + +++ ++ E+  SEQ ARM+AMD++S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct:  224 DVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_GEOMG (ATP synthase gamma chain OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=atpG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.459e-18
Identity = 45/79 (56.96%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   40 TKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 276
            +KGE+L  L        +F A+LE+  SE GARM+AMDS+S+NA EM+ +LTL YNR RQA+ITTEL+EIISGA +++G
Sbjct:  209 SKGELLDELLPKHIEVQVFKALLESVASEHGARMTAMDSASKNATEMIGKLTLQYNRARQAAITTELMEIISGAESIKG 287          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_RHOBL (ATP synthase gamma chain OS=Rhodopseudomonas blastica GN=atpG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.518e-18
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   19 YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            Y+ E  E    IL +L     +  +F A+LENA SEQGARMSAMD+++RNAG+M+++LT+ YNR+RQA+IT ELIEIISGA AL
Sbjct:  205 YDYEPSEEA--ILADLLPRGVATQIFTALLENAASEQGARMSAMDNATRNAGDMINKLTIQYNRSRQAAITKELIEIISGAEAL 286          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_GEOSL (ATP synthase gamma chain OS=Geobacter sulfurreducens GN=atpG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.518e-18
Identity = 45/79 (56.96%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   40 TKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 276
            +KGE+L  L        +F A+LE+  SE GARM+AMDS+S+NA EM+ +LTL YNR RQA+ITTEL+EIISGA +++G
Sbjct:  209 SKGELLAELLPKHIEVQVFKALLESVASEHGARMTAMDSASKNATEMIGKLTLQYNRARQAAITTELMEIISGAESIKG 287          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_BEII9 (ATP synthase gamma chain OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=atpG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.518e-18
Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   19 YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            YE E  E   +IL  L     +  +  A+LENA SEQGARMSAMD++SRNAGEM+ + TL YNR+RQA IT ELIEIISGA AL
Sbjct:  212 YEYEPSEE--QILATLLPRNITIQVLRALLENAASEQGARMSAMDNASRNAGEMIKKQTLKYNRSRQAMITKELIEIISGAEAL 293          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_PONAB (ATP synthase subunit gamma, mitochondrial OS=Pongo abelii GN=ATP5C1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.901e-18
Identity = 43/74 (58.11%), Postives = 61/74 (82.43%), Query Frame = 1
Query:   49 EILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            ++LQN  E+  + +++ ++ E+  SEQ ARM+AMD++S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL
Sbjct:  224 DVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297          
The following BLAST results are available for this feature:
BLAST of FC871836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
ATPG_SILPO3.459e-1856.67ATP synthase gamma chain OS=Silicibacter pomeroyi ... [more]
ATPG_RHOSK3.459e-1856.67ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]
ATPG_RHOS43.459e-1856.67ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]
ATPG_RHOS13.459e-1856.67ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]
ATPG_HUMAN3.459e-1857.33ATP synthase subunit gamma, mitochondrial OS=Homo ... [more]
ATPG_GEOMG3.459e-1856.96ATP synthase gamma chain OS=Geobacter metallireduc... [more]
ATPG_RHOBL4.518e-1858.33ATP synthase gamma chain OS=Rhodopseudomonas blast... [more]
ATPG_GEOSL4.518e-1856.96ATP synthase gamma chain OS=Geobacter sulfurreduce... [more]
ATPG_BEII94.518e-1860.71ATP synthase gamma chain OS=Beijerinckia indica su... [more]
ATPG_PONAB5.901e-1858.11ATP synthase subunit gamma, mitochondrial OS=Pongo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DD06FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871836 ID=FC871836; Name=FC871836; organism=Citrus sinensis; type=EST; length=495bp
CTTGGTGAGCTAGACTCCTATGAAATTGAAGGCGGTGAAACAAAGGGTGA
AATACTTCAAAATCTGGCTGAGTTCCAATTCTCTTGTGTCATGTTCAATG
CGGTGTTGGAGAATGCCTGCAGTGAGCAAGGGGCAAGGATGTCTGCCATG
GATAGCTCAAGCAGAAATGCAGGAGAAATGCTTGATCGCCTCACTCTTAC
TTATAACAGAACTCGTCAAGCATCTATCACCACCGAGTTGATTGAGATTA
TATCTGGAGCATCAGCACTGGAAGGCTGATTACAAAAGCGACAGTGCTCA
CTTTTCTTGACAGTGACGAAATAAATCCTTGGTGGAGGCTTTGTTCAAAC
TTCAATGTGGTACTTTCATAAGAGTTTTTGTTGAGCTACTCCAATAATCT
CTCCAGTGTTAAAACTTGGGGAATTAACAATTATACTTGCGATATTTTCA
ATATAGTTTTTGATTCTCAATTAAAAAAAAAAAAAAAAAAAAAAA
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