FC871836

Overview
NameFC871836
Unique NameFC871836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_RHOCA (ATP synthase gamma chain OS=Rhodobacter capsulatus GN=atpG PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17
Identity = 48/84 (57.14%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   19 YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            Y+ E G+   EIL  L     +  +F A+LEN  S  GA+MSAMD+++RNAG+M+DRLT+ YNR+RQA+IT ELIEIISGA AL
Sbjct:  209 YDYEPGDQ--EILTALLPRAVATAIFAALLENNASFNGAQMSAMDNATRNAGDMIDRLTIEYNRSRQAAITKELIEIISGAEAL 290          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_RHISN (ATP synthase gamma chain OS=Rhizobium sp. (strain NGR234) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   52 ILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            IL +L     S  +F A+LEN   E GA+MSAMD+++RNAGEM+++LTL YNR RQA IT ELIEIISGA AL
Sbjct:  221 ILTDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLNYNRQRQAQITKELIEIISGAEAL 293          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_MAGSA (ATP synthase gamma chain OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   19 YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            YE E  E   EIL  +     +  MF A+LE+  SEQGARM+AMD+++RNAG+M++ L + YNR+RQA IT ELIEIISGA AL
Sbjct:  213 YEFEPSEE--EILAEILPRNLATQMFRALLESQASEQGARMTAMDNATRNAGDMINALAIKYNRSRQAQITKELIEIISGAEAL 294          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_GEOUR (ATP synthase gamma chain OS=Geobacter uraniireducens (strain Rf4) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   40 TKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 276
            +K  +L  L        MF A+LE+  SE GARM+AMDS+S+NA EM+ +LTL YNR RQA+ITTEL+EIISG+ +++G
Sbjct:  209 SKAALLDELLPKHIEVQMFKAMLESVASEHGARMTAMDSASKNASEMIGKLTLQYNRARQAAITTELMEIISGSESIKG 287          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_ERYLH (ATP synthase gamma chain OS=Erythrobacter litoralis (strain HTCC2594) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.995e-17
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   22 EIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            E E GE   EIL+ L        +F A+LE   SEQGA M+AMD+++RNAG+++++LT+ YNR+RQA+ITTELIEII+GA AL
Sbjct:  210 EYEPGEE--EILEELLPRYVKTQLFGALLEREASEQGASMTAMDNATRNAGDLINKLTIQYNRSRQAAITTELIEIIAGAEAL 290          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_BART1 (ATP synthase gamma chain OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.995e-17
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 1
Query:   52 ILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            +L+ L     S  +F A+LEN   E GA+M+AMD++SRNAGEM+++LT+ YNR RQA ITTELIEII+GA AL
Sbjct:  236 LLEALVPRNLSVQIFRALLENVAGEMGAKMTAMDNASRNAGEMINKLTVAYNRQRQAQITTELIEIIAGAEAL 308          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_AGRRK (ATP synthase gamma chain OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=atpG PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 1
Query:   52 ILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            IL +L     S  +F A+LEN   E G++MSAMD+++RNAGEM+++LTL+YNR RQA IT ELIEIISGA AL
Sbjct:  222 ILADLIPRNISVQIFRALLENVAGEMGSKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 294          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_BARQU (ATP synthase gamma chain OS=Bartonella quintana GN=atpG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.521e-17
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1
Query:   52 ILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            +L+ L     S  +F A+LEN   E GA+++AMD++SRNAGEM+++LT+ YNR RQA ITTELIEII+GA AL
Sbjct:  231 LLEELVPRNLSVQIFQALLENVAGEMGAKVTAMDNASRNAGEMINKLTVAYNRQRQAQITTELIEIIAGAEAL 303          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_OCHA4 (ATP synthase gamma chain OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.113e-16
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   52 ILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            IL  L     S  +F A+LEN   E GA+MSAMD+++RNAG+M+++L++TYNR RQA IT ELIEIISGA AL
Sbjct:  220 ILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_GRABC (ATP synthase gamma chain OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.113e-16
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   19 YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            YE E  E    +L  L     +  ++ A+LE+A  E  ARM+AMD+++RNAG+M+ RL+LTYNRTRQA+IT ELIEIISGA AL
Sbjct:  217 YEFEPDEET--LLAKLLPQNLAIQIYRAILESAAGEHAARMTAMDNATRNAGDMIKRLSLTYNRTRQANITRELIEIISGAEAL 298          
The following BLAST results are available for this feature:
BLAST of FC871836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
ATPG_RHOCA3.825e-1757.14ATP synthase gamma chain OS=Rhodobacter capsulatus... [more]
ATPG_RHISN3.825e-1761.64ATP synthase gamma chain OS=Rhizobium sp. (strain ... [more]
ATPG_MAGSA3.825e-1755.95ATP synthase gamma chain OS=Magnetospirillum magne... [more]
ATPG_GEOUR3.825e-1754.43ATP synthase gamma chain OS=Geobacter uraniireduce... [more]
ATPG_ERYLH4.995e-1755.42ATP synthase gamma chain OS=Erythrobacter litorali... [more]
ATPG_BART14.995e-1758.90ATP synthase gamma chain OS=Bartonella tribocorum ... [more]
ATPG_AGRRK6.524e-1760.27ATP synthase gamma chain OS=Agrobacterium radiobac... [more]
ATPG_BARQU8.521e-1757.53ATP synthase gamma chain OS=Bartonella quintana GN... [more]
ATPG_OCHA41.113e-1658.90ATP synthase gamma chain OS=Ochrobactrum anthropi ... [more]
ATPG_GRABC1.113e-1654.76ATP synthase gamma chain OS=Granulibacter bethesde... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1DD06FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871836 ID=FC871836; Name=FC871836; organism=Citrus sinensis; type=EST; length=495bp
CTTGGTGAGCTAGACTCCTATGAAATTGAAGGCGGTGAAACAAAGGGTGA
AATACTTCAAAATCTGGCTGAGTTCCAATTCTCTTGTGTCATGTTCAATG
CGGTGTTGGAGAATGCCTGCAGTGAGCAAGGGGCAAGGATGTCTGCCATG
GATAGCTCAAGCAGAAATGCAGGAGAAATGCTTGATCGCCTCACTCTTAC
TTATAACAGAACTCGTCAAGCATCTATCACCACCGAGTTGATTGAGATTA
TATCTGGAGCATCAGCACTGGAAGGCTGATTACAAAAGCGACAGTGCTCA
CTTTTCTTGACAGTGACGAAATAAATCCTTGGTGGAGGCTTTGTTCAAAC
TTCAATGTGGTACTTTCATAAGAGTTTTTGTTGAGCTACTCCAATAATCT
CTCCAGTGTTAAAACTTGGGGAATTAACAATTATACTTGCGATATTTTCA
ATATAGTTTTTGATTCTCAATTAAAAAAAAAAAAAAAAAAAAAAA
back to top