FC871835

Overview
NameFC871835
Unique NameFC871835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_METJA (Translation initiation factor 6 OS=Methanocaldococcus jannaschii GN=eif6 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.471e-22
Identity = 77/230 (33.48%), Postives = 119/230 (51.74%), Query Frame = 2
Query:   29 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPV--VKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 700
            M  R  F     +GV +  T    L+ I   +   +    E+++V+    ++T+IGG+ ++G L   NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  AL   +L ++ ++ I D L VEV   TIA    VGS    +N+G L HP    ++L+ L +L +V  +  GT N+G+  + A +  N   A  G DTT  EL +IE    L
Sbjct:    3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVN----EVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227          
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_HALS3 (Translation initiation factor 6 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.274e-21
Identity = 65/216 (30.09%), Postives = 104/216 (48.15%), Query Frame = 2
Query:   38 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            R  F  S  +GVF++ T +  LV     + F  +   EL   +P V+T++GG+  +G L AGN +GLL+ +   ++E   +  +    V V  +   ++A GN +  ND  A  H+ L  +    + + L V   R  +AG   VG+    +  G L HP  +  +L+ +   L V    GTVN G+ ++ +GL   D     G DTT  E+  IE
Sbjct:    3 RAAFRGSAYIGVFARATESCVLVRPDLDDDFVDSIADELG--VPAVQTTVGGSSTVGSLAAGNSSGLLVSNRIRERERDRIEAA---GVTVGELPGAVNAAGNVVVANDDGAYVHSGLSDDAVAAVEETLDVSATRGQLAGVDTVGTAAVATTDGVLCHPKATDAELERIEETLGVYADVGTVNYGAPLVGSGLVAADDGYLVGDDTTGPEIGRIE 213          
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_THEAC (Translation initiation factor 6 OS=Thermoplasma acidophilum GN=eif6 PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.174e-21
Identity = 62/209 (29.67%), Postives = 107/209 (51.20%), Query Frame = 2
Query:   65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESV 691
            +G+++K  +    + +   E   + F+  L   + V + SI  + +IG +   N NGL++P+ +    L  L     D   V +++++++A+GN I  NDH A+ H +    + + I D LGVE  R TI   + VGS    +++G LV+P T  ++L+ L    +V + +GT N GS  + A +  N      G DTT  E+  I+ V
Sbjct:   13 IGIYAKAWDDVAFITMMADEKTVADFQEVLQ--VDVRRISIDNSSLIGTMMVMNSNGLIVPYGSEITGLGDL-----DGRNVLQLKDKINAIGNDIIANDHGAIIHKNFSNRSRKEIEDTLGVETIRTTIGNILTVGSAGILTSKGMLVNPETDDDELEFLRDFFKVSVKSGTANFGSIYVGASIVANSKGVLVGKDTTPIEMDRIDDV 214          
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_THEVO (Translation initiation factor 6 OS=Thermoplasma volcanium GN=eif6 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.708e-21
Identity = 66/223 (29.60%), Postives = 111/223 (49.78%), Query Frame = 2
Query:   23 VIMATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESV 691
            VI  T +M   S  +G+++K  +    +     E   + F   L   + + + SI G+ +IG + A N NG++LP+ +    L  +     D   V  ++++++A+GN I  NDH A+ H     +  + I D LGVE  R +I   + VGS    +++G LV+P T  ++L+ L    +V + +GT N GS  + A +  N      G DTT  E+  I+ V
Sbjct:    3 VIRKTSVM--RSSFIGIYAKAWDDVAFITKMADEKTVNEFREVLQ--VDIKRISIDGSTLIGTMIAVNSNGIVLPYGSNIDGLDGI-----DGRNVLYLKDKINAVGNDIIANDHGAIIHKAFSNKARKEIEDTLGVETIRTSIGNILTVGSASVLTSKGMLVNPETDDDELEFLKDFFKVSVKSGTANFGSIYVGASIVANSKGILVGRDTTPIEIDRIDDV 216          
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_METHJ (Translation initiation factor 6 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=eif6 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.708e-21
Identity = 63/214 (29.44%), Postives = 107/214 (50.00%), Query Frame = 2
Query:   65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 706
            +GVF+++ +   +V     E   + +E  L   + +V+T+I  + IIG L  GN NGL++    T++E+     +L +   +  +EE ++A GN I  NDH A  H ++D E  + ++D L V V   T+     VG     +N G +V P T+  ++  L  +  +P+  GTV  G+ ++  GL  N +    G  T+  EL  IE +    E
Sbjct:   13 IGVFTRVFDDIAVVPPDVPEEVTTRYEEALK--VEIVRTTIQRSPIIGSLLVGNNNGLVITGMATEEEIA----TLSEYRDLMLLEEGMNAAGNIILANDHFAAVHPEMDEEFMDALSDFLKVPVIPLTLGDVKTVGMAAVATNSGVVVSPRTTPGEIQRLEQVCSLPVGKGTVTMGNAMVGTGLVANRYGYLAGVGTSGYELGRIEDILGFEE 220          
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_HALLT (Translation initiation factor 6 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eif6 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.708e-21
Identity = 68/216 (31.48%), Postives = 101/216 (46.76%), Query Frame = 2
Query:   38 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            R  F  S  VGVF++  +   LV     E        EL      + T++GG   +G L  GN+NG+L+    T++E   +  +   +V    +   ++A GN +  ND+ A  H DL RE+   I + LGV V R  +     VG+    +N G L HP ++  +L  +   L V    GT+N G+ +I +GL   D     G DTT  EL  IE
Sbjct:    3 RATFTGSSYVGVFARAIDDLLLVRPDVDEELADALGEELG--AEPLLTTVGGANTVGSLATGNENGVLVSARATEREQSRIAEAADCEV--GELPGEINAAGNVVLANDYGAYVHPDLPRESIVTIRETLGVPVVRGDLGDVRTVGTAAVANNTGVLCHPKSTESELQAVEEALDVRADLGTINYGAPLIGSGLIATDEGYVVGEDTTGPELGRIE 214          
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_CENSY (Translation initiation factor 6 OS=Cenarchaeum symbiosum GN=eif6 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.708e-21
Identity = 59/210 (28.10%), Postives = 110/210 (52.38%), Query Frame = 2
Query:   65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 694
            +G+++   +    +  G +++  +  E  L      + TS+  TR++G L   N +G+++P T ++ E +  +      VVV  ++ + +ALGN I+ ND   +      RE   +IAD LG+EV ++ IAG   VG+    ++ GG++HP T  ED+  +S ++ V +   T+N G   +++GL  N  +   GS T+  E+ ++   F
Sbjct:   14 IGIYTSANDEKIFLPRGFAKAKAARLEGYLG--AEALYTSVANTRLMGTLMVLNNSGIIMPSTISEIEYEFYKKHTDLNVVV--LDTKFTALGNMISVNDRGGVVSPVFPREEVRIIADALGIEVIQRRIAGYNQVGAMMVATSGGGIIHPETDGEDVKRISEVMGVHMEPATINGGIPFVSSGLLANKKSVVAGSFTSGPEIMMLTRAF 219          
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_ARCFU (Translation initiation factor 6 OS=Archaeoglobus fulgidus GN=eif6 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.409e-20
Identity = 57/207 (27.54%), Postives = 106/207 (51.21%), Query Frame = 2
Query:   65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            +G+++K++  Y +V +   E      + +L   + V+ T I G+ ++G + A N  G ++       EL+ L  SL   V    IE  ++  GN +  ND   + + +++    E +AD + +E+ + T+ G   VG     +NRGGL +P+ +  +  +L  +  V ++ GTVN G++++ +GL  N      G DTT  EL ++E
Sbjct:   11 IGLYAKVSEEYAVVGVN-HEPLIDAIQEKLD--VDVIVTKIAGSELVGAMMALNSRGAVVSDQVLSSELRELEKSLDVLV----IETPMTCFGNNLLINDRGGIANPEMESSVVEKVADFMDIELVKGTVGGIKTVGMAAVVTNRGGLANPNINEWEAKKLQEVAGVEVLTGTVNFGTDMVGSGLVANSKGYVVGRDTTGFELGIVE 210          
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_METLZ (Translation initiation factor 6 OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eif6 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.840e-20
Identity = 69/225 (30.67%), Postives = 112/225 (49.78%), Query Frame = 2
Query:   29 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL---QVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 694
            M   L       +GV++++     +V +   + F     AE  DV  V++T + G+ +IG L  GN  G ++     D EL+ L+    D ++   + E ++A GN I  ND  A+ H D+     EM+AD L V++   + AG   VG  C+ +N G L+   ++ E++++L   +    V +  G+VN GS +I  GL +N      G+ TT  EL  IE VF
Sbjct:    1 MDPTLSLNGDPNIGVYARVFEDLAVVPVEAPKEFRDKI-AEALDV-EVIETFVQGSSVIGLLLTGNSRGFVVSGLIQDSELEILQE-YGDCLL---LGEEMNAAGNVILTNDSFAVVHPDMSSAMREMVADFLKVKIIPMSFAGVGTVGMTCACTNTGVLLPARSTPEEIEKLERSIDDANVAIGTGSVNMGSGLIGTGLLINSKGYLAGNATTGYELGRIEDVF 219          
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_STAMF (Translation initiation factor 6 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.139e-20
Identity = 68/215 (31.63%), Postives = 105/215 (48.84%), Query Frame = 2
Query:   38 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATEL 673
            RL    +  +GV+    N+  LV    S        AE  DV  +V+T I  T + G L  GN NG++LP    D+EL  L N+L      + V R +   +ALGN + CN+   +  ++L+R+    I++ LGVE   + I    + GS    +++GG++HP  S ++  EL  + +V     TVN G   I +GL  N+     G  TT  E+
Sbjct:    5 RLSLFGNPNIGVYVFANNSIALVPPSLSSGEKKVI-AETLDV-ELVETKIANTILNGVLVVGNDNGIILPRIILDEELDILNNNLKKHDLNIYVSRSKN--TALGNILLCNNKACIAGSELERQELNKISEALGVEALYKDIMNLTIPGSLAVVTDKGGVIHPDISDDENRELKEIFKVAFERATVNSGIPFIKSGLIANNKGIIVGEYTTGPEI 215          
The following BLAST results are available for this feature:
BLAST of FC871835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_METJA7.471e-2233.48Translation initiation factor 6 OS=Methanocaldococ... [more]
IF6_HALS31.274e-2130.09Translation initiation factor 6 OS=Halobacterium s... [more]
IF6_THEAC2.174e-2129.67Translation initiation factor 6 OS=Thermoplasma ac... [more]
IF6_THEVO3.708e-2129.60Translation initiation factor 6 OS=Thermoplasma vo... [more]
IF6_METHJ3.708e-2129.44Translation initiation factor 6 OS=Methanospirillu... [more]
IF6_HALLT3.708e-2131.48Translation initiation factor 6 OS=Halorubrum lacu... [more]
IF6_CENSY3.708e-2128.10Translation initiation factor 6 OS=Cenarchaeum sym... [more]
IF6_ARCFU1.409e-2027.54Translation initiation factor 6 OS=Archaeoglobus f... [more]
IF6_METLZ1.840e-2030.67Translation initiation factor 6 OS=Methanocorpuscu... [more]
IF6_STAMF3.139e-2031.63Translation initiation factor 6 OS=Staphylothermus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DD05FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871835 ID=FC871835; Name=FC871835; organism=Citrus sinensis; type=EST; length=783bp
TCAATTCAATTTCTGTCAATCTGTAATCATGGCAACCAGGCTTATGTTTG
AGAATTCATGTGAGGTTGGTGTGTTTTCCAAGCTCACTAATGCTTATTGC
TTGGTTGCAATTGGAGGTTCTGAAAGCTTCTACAGCACATTTGAGGCTGA
GTTAGCAGATGTCATTCCTGTTGTTAAAACATCTATTGGTGGCACTAGGA
TTATCGGCCGGCTTTGTGCTGGAAACAAAAATGGGCTTCTCTTGCCACAC
ACTACCACAGACCAAGAACTTCAACACTTGAGGAACAGCCTACCTGATCA
AGTTGTCGTTCAGCGTATTGAAGAGAGGCTATCTGCCCTGGGCAATTGTA
TAGCATGCAACGACCATGTTGCTCTTACACACACAGATCTTGACAGGGAA
ACAGAGGAAATGATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGAC
AATTGCTGGTAATATCCTTGTTGGCAGTTACTGTTCCTTCTCCAACAGAG
GAGGCTTGGTCCACCCTCACACATCCATTGAAGACTTGGATGAACTTTCA
ACTCTCTTGCAAGTACCTTTGGTGGCTGGGACTGTGAACCGTGGAAGCGA
AGTCATAGCTGCTGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGAT
CAGACACCACAGCAACTGAACTCTCTGTTATTGAGAGTGTTTTCAAGTTG
AGGGAAGCTCAACCTAGTGCCCTTGTGGACGAGATGAGGAAATCTTTAAT
TGACAGTTATGTCTAAGTTACTTTGGCTTACAG
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