FC871835
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_METJA (Translation initiation factor 6 OS=Methanocaldococcus jannaschii GN=eif6 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 7.471e-22 Identity = 77/230 (33.48%), Postives = 119/230 (51.74%), Query Frame = 2 Query: 29 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPV--VKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 700 M R F +GV + T L+ I + + E+++V+ ++T+IGG+ ++G L NK GLLLP D+EL ++N L + + V+ I+ + +ALGN I ND AL +L ++ ++ I D L VEV TIA VGS +N+G L HP ++L+ L +L +V + GT N+G+ + A + N A G DTT EL +IE L Sbjct: 3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVN----EVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_HALS3 (Translation initiation factor 6 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eif6 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.274e-21 Identity = 65/216 (30.09%), Postives = 104/216 (48.15%), Query Frame = 2 Query: 38 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685 R F S +GVF++ T + LV + F + EL +P V+T++GG+ +G L AGN +GLL+ + ++E + + V V + ++A GN + ND A H+ L + + + L V R +AG VG+ + G L HP + +L+ + L V GTVN G+ ++ +GL D G DTT E+ IE Sbjct: 3 RAAFRGSAYIGVFARATESCVLVRPDLDDDFVDSIADELG--VPAVQTTVGGSSTVGSLAAGNSSGLLVSNRIRERERDRIEAA---GVTVGELPGAVNAAGNVVVANDDGAYVHSGLSDDAVAAVEETLDVSATRGQLAGVDTVGTAAVATTDGVLCHPKATDAELERIEETLGVYADVGTVNYGAPLVGSGLVAADDGYLVGDDTTGPEIGRIE 213
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_THEAC (Translation initiation factor 6 OS=Thermoplasma acidophilum GN=eif6 PE=3 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 2.174e-21 Identity = 62/209 (29.67%), Postives = 107/209 (51.20%), Query Frame = 2 Query: 65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESV 691 +G+++K + + + E + F+ L + V + SI + +IG + N NGL++P+ + L L D V +++++++A+GN I NDH A+ H + + + I D LGVE R TI + VGS +++G LV+P T ++L+ L +V + +GT N GS + A + N G DTT E+ I+ V Sbjct: 13 IGIYAKAWDDVAFITMMADEKTVADFQEVLQ--VDVRRISIDNSSLIGTMMVMNSNGLIVPYGSEITGLGDL-----DGRNVLQLKDKINAIGNDIIANDHGAIIHKNFSNRSRKEIEDTLGVETIRTTIGNILTVGSAGILTSKGMLVNPETDDDELEFLRDFFKVSVKSGTANFGSIYVGASIVANSKGVLVGKDTTPIEMDRIDDV 214
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_THEVO (Translation initiation factor 6 OS=Thermoplasma volcanium GN=eif6 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.708e-21 Identity = 66/223 (29.60%), Postives = 111/223 (49.78%), Query Frame = 2 Query: 23 VIMATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESV 691 VI T +M S +G+++K + + E + F L + + + SI G+ +IG + A N NG++LP+ + L + D V ++++++A+GN I NDH A+ H + + I D LGVE R +I + VGS +++G LV+P T ++L+ L +V + +GT N GS + A + N G DTT E+ I+ V Sbjct: 3 VIRKTSVM--RSSFIGIYAKAWDDVAFITKMADEKTVNEFREVLQ--VDIKRISIDGSTLIGTMIAVNSNGIVLPYGSNIDGLDGI-----DGRNVLYLKDKINAVGNDIIANDHGAIIHKAFSNKARKEIEDTLGVETIRTSIGNILTVGSASVLTSKGMLVNPETDDDELEFLKDFFKVSVKSGTANFGSIYVGASIVANSKGILVGRDTTPIEIDRIDDV 216
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_METHJ (Translation initiation factor 6 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=eif6 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.708e-21 Identity = 63/214 (29.44%), Postives = 107/214 (50.00%), Query Frame = 2 Query: 65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 706 +GVF+++ + +V E + +E L + +V+T+I + IIG L GN NGL++ T++E+ +L + + +EE ++A GN I NDH A H ++D E + ++D L V V T+ VG +N G +V P T+ ++ L + +P+ GTV G+ ++ GL N + G T+ EL IE + E Sbjct: 13 IGVFTRVFDDIAVVPPDVPEEVTTRYEEALK--VEIVRTTIQRSPIIGSLLVGNNNGLVITGMATEEEIA----TLSEYRDLMLLEEGMNAAGNIILANDHFAAVHPEMDEEFMDALSDFLKVPVIPLTLGDVKTVGMAAVATNSGVVVSPRTTPGEIQRLEQVCSLPVGKGTVTMGNAMVGTGLVANRYGYLAGVGTSGYELGRIEDILGFEE 220
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_HALLT (Translation initiation factor 6 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eif6 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.708e-21 Identity = 68/216 (31.48%), Postives = 101/216 (46.76%), Query Frame = 2 Query: 38 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685 R F S VGVF++ + LV E EL + T++GG +G L GN+NG+L+ T++E + + +V + ++A GN + ND+ A H DL RE+ I + LGV V R + VG+ +N G L HP ++ +L + L V GT+N G+ +I +GL D G DTT EL IE Sbjct: 3 RATFTGSSYVGVFARAIDDLLLVRPDVDEELADALGEELG--AEPLLTTVGGANTVGSLATGNENGVLVSARATEREQSRIAEAADCEV--GELPGEINAAGNVVLANDYGAYVHPDLPRESIVTIRETLGVPVVRGDLGDVRTVGTAAVANNTGVLCHPKSTESELQAVEEALDVRADLGTINYGAPLIGSGLIATDEGYVVGEDTTGPELGRIE 214
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_CENSY (Translation initiation factor 6 OS=Cenarchaeum symbiosum GN=eif6 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.708e-21 Identity = 59/210 (28.10%), Postives = 110/210 (52.38%), Query Frame = 2 Query: 65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 694 +G+++ + + G +++ + E L + TS+ TR++G L N +G+++P T ++ E + + VVV ++ + +ALGN I+ ND + RE +IAD LG+EV ++ IAG VG+ ++ GG++HP T ED+ +S ++ V + T+N G +++GL N + GS T+ E+ ++ F Sbjct: 14 IGIYTSANDEKIFLPRGFAKAKAARLEGYLG--AEALYTSVANTRLMGTLMVLNNSGIIMPSTISEIEYEFYKKHTDLNVVV--LDTKFTALGNMISVNDRGGVVSPVFPREEVRIIADALGIEVIQRRIAGYNQVGAMMVATSGGGIIHPETDGEDVKRISEVMGVHMEPATINGGIPFVSSGLLANKKSVVAGSFTSGPEIMMLTRAF 219
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_ARCFU (Translation initiation factor 6 OS=Archaeoglobus fulgidus GN=eif6 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.409e-20 Identity = 57/207 (27.54%), Postives = 106/207 (51.21%), Query Frame = 2 Query: 65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685 +G+++K++ Y +V + E + +L + V+ T I G+ ++G + A N G ++ EL+ L SL V IE ++ GN + ND + + +++ E +AD + +E+ + T+ G VG +NRGGL +P+ + + +L + V ++ GTVN G++++ +GL N G DTT EL ++E Sbjct: 11 IGLYAKVSEEYAVVGVN-HEPLIDAIQEKLD--VDVIVTKIAGSELVGAMMALNSRGAVVSDQVLSSELRELEKSLDVLV----IETPMTCFGNNLLINDRGGIANPEMESSVVEKVADFMDIELVKGTVGGIKTVGMAAVVTNRGGLANPNINEWEAKKLQEVAGVEVLTGTVNFGTDMVGSGLVANSKGYVVGRDTTGFELGIVE 210
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_METLZ (Translation initiation factor 6 OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eif6 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.840e-20 Identity = 69/225 (30.67%), Postives = 112/225 (49.78%), Query Frame = 2 Query: 29 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL---QVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 694 M L +GV++++ +V + + F AE DV V++T + G+ +IG L GN G ++ D EL+ L+ D ++ + E ++A GN I ND A+ H D+ EM+AD L V++ + AG VG C+ +N G L+ ++ E++++L + V + G+VN GS +I GL +N G+ TT EL IE VF Sbjct: 1 MDPTLSLNGDPNIGVYARVFEDLAVVPVEAPKEFRDKI-AEALDV-EVIETFVQGSSVIGLLLTGNSRGFVVSGLIQDSELEILQE-YGDCLL---LGEEMNAAGNVILTNDSFAVVHPDMSSAMREMVADFLKVKIIPMSFAGVGTVGMTCACTNTGVLLPARSTPEEIEKLERSIDDANVAIGTGSVNMGSGLIGTGLLINSKGYLAGNATTGYELGRIEDVF 219
BLAST of FC871835 vs. ExPASy Swiss-Prot
Match: IF6_STAMF (Translation initiation factor 6 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif6 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.139e-20 Identity = 68/215 (31.63%), Postives = 105/215 (48.84%), Query Frame = 2 Query: 38 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATEL 673 RL + +GV+ N+ LV S AE DV +V+T I T + G L GN NG++LP D+EL L N+L + V R + +ALGN + CN+ + ++L+R+ I++ LGVE + I + GS +++GG++HP S ++ EL + +V TVN G I +GL N+ G TT E+ Sbjct: 5 RLSLFGNPNIGVYVFANNSIALVPPSLSSGEKKVI-AETLDV-ELVETKIANTILNGVLVVGNDNGIILPRIILDEELDILNNNLKKHDLNIYVSRSKN--TALGNILLCNNKACIAGSELERQELNKISEALGVEALYKDIMNLTIPGSLAVVTDKGGVIHPDISDDENRELKEIFKVAFERATVNSGIPFIKSGLIANNKGIIVGEYTTGPEI 215 The following BLAST results are available for this feature:
BLAST of FC871835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871835 ID=FC871835; Name=FC871835; organism=Citrus sinensis; type=EST; length=783bpback to top |