EY665069

Overview
NameEY665069
Unique NameEY665069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665069 vs. ExPASy Swiss-Prot
Match: ACO11_TRINI (Acyl-CoA Delta(11) desaturase OS=Trichoplusia ni GN=D11DS PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.314e-12
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  385 HLLALFAPF-CFT---WSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFXHMXWLFDK 696
            HL AL+  + CFT   W +L  +F L+ ++ + GIT   HR  +H++FK    LE +       + Q   I W   HR HH++ D++ DPH+   GF++ H+ WL  K
Sbjct:   48 HLAALYGLYLCFTSAKWETLLFSFVLFHMSNI-GITAGAHRLWTHKTFKAKLPLEIVLMIFNSLAFQNTAITWAREHRLHHKYSDTDADPHNASRGFFYSHVGWLLVK 154          
BLAST of EY665069 vs. ExPASy Swiss-Prot
Match: ACOD_SHEEP (Acyl-CoA desaturase OS=Ovis aries GN=SCD PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 1
Query:  382 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFXHMXWL 687
            +HL AL+     P C  ++ L V F  Y V   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+F H+ WL
Sbjct:   82 LHLGALYGITLIPTCKIYTFLWVLF--YYVISALGITAGVHRLWSHRTYKARLPLRVFLIIANTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWL 185          
BLAST of EY665069 vs. ExPASy Swiss-Prot
Match: SCD5_BOVIN (Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 44/134 (32.84%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  379 AMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFXHMXWLFDKGF--CLERCGRAKHVGDLXKQPFYRXLR 774
            A  L  L+A FCF  ++L             G+T   HR  SHRS+K    L    A     + Q +  +W   HR HH++ +++ DPH+   GF+F H+ WLF +     +E+ GR   V DL   P  R  R
Sbjct:   75 AQPLTLLWAYFCFLLTAL-------------GVTAGAHRLWSHRSYKAKLPLRIFLAAANSMAFQNDIFEWSRDHRVHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEK-GRKLDVTDLLADPVVRFQR 194          
BLAST of EY665069 vs. ExPASy Swiss-Prot
Match: SCD5_HUMAN (Stearoyl-CoA desaturase 5 OS=Homo sapiens GN=SCD5 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 44/149 (29.53%), Postives = 70/149 (46.98%), Query Frame = 1
Query:  334 RNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFXHMXWLFDKGF--CLERCGRAKHVGDLXKQPFYRXLR 774
            RN   + +   G V ++ L+    P    W     A+  +++  L G+T   HR  SHRS++    L    A     + Q +  +W   HR HH++ +++ DPH+   GF+F H+ WLF +     +E+ GR   V DL   P  R  R
Sbjct:   48 RNVVLMSLLHLGAVYSLVLIPKAKPLTLLW-----AYFCFLLAAL-GVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAFQNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEK-GRKLDVTDLLADPVVRIQR 189          
BLAST of EY665069 vs. ExPASy Swiss-Prot
Match: ACOD_CAPHI (Acyl-CoA desaturase OS=Capra hircus GN=SCD PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 37/106 (34.91%), Postives = 54/106 (50.94%), Query Frame = 1
Query:  382 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFXHMXWL 687
            +HL AL+     P C  ++ L V F  Y +   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+F H+ WL
Sbjct:   82 LHLGALYGITLIPTCKIYTFLWVLF--YYMMSALGITAGVHRLWSHRTYKARLPLRVFLIIANTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWL 185          
BLAST of EY665069 vs. ExPASy Swiss-Prot
Match: ACOD_BOVIN (Acyl-CoA desaturase OS=Bos taurus GN=SCD PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 1
Query:  382 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFXHMXWL 687
            +HL AL+     P C  ++ + V F  Y + G LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+F H+ WL
Sbjct:   82 LHLGALYGITLIPTCKIYTYIWVLF--YYLMGALGITAGAHRLWSHRTYKARLPLRVFLIIGNTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWL 185          
BLAST of EY665069 vs. ExPASy Swiss-Prot
Match: ACOD1_MOUSE (Acyl-CoA desaturase 1 OS=Mus musculus GN=Scd1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 37/111 (33.33%), Postives = 57/111 (51.35%), Query Frame = 1
Query:  370 VVLAMHLLALFA----PFCFTWSSLRVAFGL-YVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFXHMXWL 687
            +++ +HL  L+     P C  ++ L   FG+ Y +T  LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+F H+ WL
Sbjct:   74 LMVLLHLGGLYGIILVPSCKLYTCL---FGIFYYMTSALGITAGAHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWL 181          
BLAST of EY665069 vs. ExPASy Swiss-Prot
Match: ACOD_CYPCA (Acyl-CoA desaturase OS=Cyprinus carpio PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 37/108 (34.26%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  382 MHLLALFAPFCF------TWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFXHMXWL 687
            +HL AL+  F F      TW    + F   ++   LGIT   HR  SHRS+K    L+   A     + Q +  +W   HR HH++ +++ DPH+ + GF+F H+ WL
Sbjct:   49 LHLGALYGLFLFPSARALTW----IWFFGCLLFSALGITAGAHRLWSHRSYKASLPLQIFLALGNSMAFQNDIYEWSRDHRVHHKYSETDADPHNAVRGFFFSHVGWL 152          
BLAST of EY665069 vs. ExPASy Swiss-Prot
Match: ACOD2_MOUSE (Acyl-CoA desaturase 2 OS=Mus musculus GN=Scd2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 37/106 (34.91%), Postives = 52/106 (49.06%), Query Frame = 1
Query:  382 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFXHMXWL 687
            +HL AL+     P C  ++ L     LY V   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+F H+ WL
Sbjct:   81 LHLGALYGITLVPSCKLYTCLFAY--LYYVISALGITAGAHRLWSHRTYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWL 184          
BLAST of EY665069 vs. ExPASy Swiss-Prot
Match: ACOD2_RAT (Acyl-CoA desaturase 2 OS=Rattus norvegicus GN=Scd2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 36/106 (33.96%), Postives = 52/106 (49.06%), Query Frame = 1
Query:  382 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFXHMXWL 687
            +H+ AL+     P C  ++ L     LY V   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+F H+ WL
Sbjct:   81 LHIGALYGITLVPSCKVYTCLFAY--LYYVISALGITAGAHRLWSHRTYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWL 184          
The following BLAST results are available for this feature:
BLAST of EY665069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
ACO11_TRINI1.314e-1235.19Acyl-CoA Delta(11) desaturase OS=Trichoplusia ni G... [more]
ACOD_SHEEP4.995e-1235.85Acyl-CoA desaturase OS=Ovis aries GN=SCD PE=2 SV=1[more]
SCD5_BOVIN6.523e-1232.84Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE... [more]
SCD5_HUMAN1.113e-1129.53Stearoyl-CoA desaturase 5 OS=Homo sapiens GN=SCD5 ... [more]
ACOD_CAPHI1.113e-1134.91Acyl-CoA desaturase OS=Capra hircus GN=SCD PE=2 SV... [more]
ACOD_BOVIN1.113e-1134.91Acyl-CoA desaturase OS=Bos taurus GN=SCD PE=2 SV=2[more]
ACOD1_MOUSE1.898e-1133.33Acyl-CoA desaturase 1 OS=Mus musculus GN=Scd1 PE=2... [more]
ACOD_CYPCA2.479e-1134.26Acyl-CoA desaturase OS=Cyprinus carpio PE=2 SV=2[more]
ACOD2_MOUSE4.228e-1134.91Acyl-CoA desaturase 2 OS=Mus musculus GN=Scd2 PE=2... [more]
ACOD2_RAT5.522e-1133.96Acyl-CoA desaturase 2 OS=Rattus norvegicus GN=Scd2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665069 ID=EY665069; Name=EY665069; organism=Citrus sinensis; type=EST; length=880bp
AAGCCTTTCTCCATGGCTTTCATCACAACATCACCAACCAAACCAAAATC
TTTCACTTTTTCACCTCTGTGTCAAGCAAGAAAAACTCAAACCGATAAAG
TTCTGGCCTTCGGCAATTCTAACTTACAACACAAGCTAATAAAAACGAGC
TTTGTGTATCATGTTTATAAATATAACAAAAGAGAGTCACTAGCAATTGT
TAATGCAGCATCAATTGAATCGACAGAACCAAAGCCAGAGCCAGAGCCAG
AGCAAATTCCCGAGGTGGAAACTTATGGGAGAATTTTGTTATCTGATGTG
TTGGTGAAGAGGAGAAGAAGTTTATTTTCTGGGAGGAATTGGAACTCATT
GGATATAAGCACAGCTGGTGTTGTTTTGGCAATGCATTTGCTTGCTCTCT
TTGCGCCATTTTGTTTCACGTGGAGTTCTCTTAGGGTTGCTTTTGGACTT
TATGTTGTGACTGGACTTCTGGGTATCACTCTTTCTTTTCACAGAAACCT
TTCTCATAGGAGTTTTAAATTACCCAAATGGCTTGAGTACTTGTTTGCTT
ATTGCGGAGTTCAGTCTCTTCAGGGGAATCCAATTGATTGGGTAAGCACA
CATAGGTATCATCACCAGTTTTGTGATTCCGAAAGGGATCCGCATAGTCC
CATTGAAGGGTTTTGGTTTANTCACATGAGNTGGCTGTTTGATAAAGGAT
TCTGTCTCGAAAGGTGTGGGAGGGCCAAACATGTGGGAGATTTANAGAAA
CAGCCTTTCTATAGATNCTTAAGAGCACTTACATTCTCCATNCAATTGCA
CTGGNAGGCTTGCTATATGCACTGGGAGGCTTTTCTTTCATTGTGTGGGG
AATGGGTGTAAAGATTGTNGGGGTATATAA
back to top