EY665065
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY665065 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 7.800e-59 Identity = 102/162 (62.96%), Postives = 129/162 (79.63%), Query Frame = 1 Query: 67 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 552 + A+ VAPF GLKS++ P ++++N SNGGR++CM+VWP G+KKFETLSYLPPLS E LLK+++YLIRS W+PCLEF + G+++REH+ SPGYYDGRYWTMWKLPM+GC T V+ EV EV+KEYP + RIIGFDN RQVQ +SFIA+KPPG Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168
BLAST of EY665065 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 218.779 bits (556), Expect = 2.774e-56 Identity = 99/162 (61.11%), Postives = 129/162 (79.63%), Query Frame = 1 Query: 67 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 552 + A+ VAPF GLKS+++ P ++++ + ++ SNGGR++CM+VWP G KKFETLSYLPPLS + LLK+++YL+R+GWIPCLEF + G+VYRE+ SP YYDGRYWTMWKLPM+GC DAT V KE+ E K YP +F R+IGFDN +Q QC+SFIA KPPG Sbjct: 9 SSATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168
BLAST of EY665065 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 213.386 bits (542), Expect = 1.166e-54 Identity = 99/170 (58.24%), Postives = 129/170 (75.88%), Query Frame = 1 Query: 49 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 546 A A A++V+ FTGLKS++ FP++ K +N SNGGRV+CM+VWPP G KFETLSYLP L++E L+KE+ YL+R+ W+PCLEF+LE G + R++++SPGYYDGRYW MWKLPM+GCT+A+ V+ EV E K YP +F+R+IGFDN RQVQCISFI KP Sbjct: 2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
BLAST of EY665065 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 3.750e-53 Identity = 102/187 (54.55%), Postives = 133/187 (71.12%), Query Frame = 1 Query: 10 MASSMIS----SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 546 MASS+++ +A A A + +++V+ FTGLKS + FP++K +N SNG RV+CM+VWPP KKFETLSYLP L+ E L+KE+ YL+++ W+PCLEFE E G + R + SPGYYDGRYW MWKLPM+GCT+A+ VL EV E K YP++F+R+IGFDN RQVQCISFI KP Sbjct: 1 MASSIMALSSTAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186
BLAST of EY665065 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 4.897e-53 Identity = 94/132 (71.21%), Postives = 108/132 (81.82%), Query Frame = 1 Query: 151 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 546 T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFEL KG+VY EH+KSP YYDGRYWTMWKLPM+G TD V+KEV EV YP +FVR+IGF+N RQVQCISFIA P Sbjct: 2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133
BLAST of EY665065 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 6.619e-50 Identity = 92/162 (56.79%), Postives = 120/162 (74.07%), Query Frame = 1 Query: 67 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 552 + A+ APF GLKS+++ P +++ + + SNGGR++CM+VWP G KKFETLSYLPPL+ E LLK+++YL+R+ W+PCLEF E G+VYRE+ SP YYDGRYWTMWKLPM+GCTDA+ V KE+ E YP I+GFDN RQ Q ++FIA KP G Sbjct: 8 SSATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166
BLAST of EY665065 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 1.057e-47 Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = 1 Query: 187 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 552 M+VWPP GLKKFETLSYLPPL+ E LL E+NYL+ GWIP LEFE++ G+VYREH KSPGYYDGRYWTMWKLPM+G TD V+ EV EV+K P +FVR IGF++KR+VQCISFIA KP G Sbjct: 1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122
BLAST of EY665065 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.865e-44 Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 1 Query: 232 SYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 552 +YLPPLS EALLK+++YLIRS W+PCLEF + G+++REH+ SPGYYDGRYWTMWKLPM+GCTDAT V+ EV EV+KEYP ++VRIIGFDN RQVQC+SFIA KPPG Sbjct: 1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106
BLAST of EY665065 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 9.257e-44 Identity = 87/178 (48.88%), Postives = 117/178 (65.73%), Query Frame = 1 Query: 16 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCISFIAAKP 546 +S+++SA V T AS A + + +++ + T +NG RV CM+VW P KFETLSYLPPLS +AL K+I+Y+I+SGW PC+EF+++ G V RE PGYYDGRYWTMWKLPM+GCTD+ VL+E+ E +K Y ++R +GFDN RQVQC SFI +P Sbjct: 2 ASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178
BLAST of EY665065 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.638e-32 Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 1 Query: 187 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 552 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+ VL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 262 HSP 2 Score: 139.813 bits (351), Expect = 1.638e-32 Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 1 Query: 187 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 552 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+ VL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 406 HSP 3 Score: 139.813 bits (351), Expect = 1.638e-32 Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 1 Query: 187 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 552 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+ VL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 693 HSP 4 Score: 139.813 bits (351), Expect = 1.638e-32 Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 1 Query: 187 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 552 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+ VL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 836 HSP 5 Score: 139.813 bits (351), Expect = 1.638e-32 Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 1 Query: 187 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 552 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+ VL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 1124 HSP 6 Score: 137.887 bits (346), Expect = 6.224e-32 Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = 1 Query: 187 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 552 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD YWTMWKLPM+GCTDA+ VL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 549 HSP 7 Score: 137.887 bits (346), Expect = 6.224e-32 Identity = 63/126 (50.00%), Postives = 85/126 (67.46%), Query Frame = 1 Query: 187 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 546 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+ VL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 1266 HSP 8 Score: 135.576 bits (340), Expect = 3.089e-31 Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 1 Query: 187 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 552 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+ VL+E+ E ++ YP +VR + FD+ +QVQ ISF+ +P G Sbjct: 854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISFVVQRPSG 980 The following BLAST results are available for this feature:
BLAST of EY665065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 128
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY665065 ID=EY665065; Name=EY665065; organism=Citrus sinensis; type=EST; length=791bpback to top |