EY665059

Overview
NameEY665059
Unique NameEY665059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665059 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.830e-22
Identity = 55/149 (36.91%), Postives = 78/149 (52.35%), Query Frame = -3
Query:  355 LWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQA-LTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPECL 792
            LWFDP  D+H Y+ILW+  HI+FYVD+VPIR  K +      FP  +PM +YST+W+   WAT GG   +++  AP+ + + D  + GC V       S      +     + +T  +  +    R  HM Y YC D  RY V   EC+
Sbjct:  144 LWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPSCKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECV 291          
BLAST of EY665059 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 56/147 (38.10%), Postives = 78/147 (53.06%), Query Frame = -3
Query:  358 LWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVP--GPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 792
            LWFDP  DYH Y+ LWN + +VFYVDD PIRVY  +    +P  Q M +  ++         G +  ID  + P+ A ++   IEGC     G   C ++P  WW   N + L++ E   Y   R  ++ YDYC+D+ RYP  P EC
Sbjct:  130 LWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSV-------QNGSI--IDPKQMPYIAKFQASKIEGCKTEFMGIDKC-TDPKFWW---NRKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPKVPQEC 263          
The following BLAST results are available for this feature:
BLAST of EY665059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH28_ARATH1.830e-2236.91Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH1.311e-2038.10Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665059 ID=EY665059; Name=EY665059; organism=Citrus sinensis; type=EST; length=881bp
GCCGGNATTAACACCTCGACCCACGCGTCCGCTAGNACTCGAGCGGCGGC
CCTTTTTTAAATTCTTTTTATGAAGAAGCTTTTATTGGCACAGAATACTG
TGCATCAAATTCAGACTTATATATGGTACAAGCAGAGCAGAAAACCCACA
TATTTCCCACTCCCATAATTACATTTAAATGCACACAATGTTTTGTTTCC
CTCCCGCCCCTCCCTTGATATGCGTATAAGTCTTTTCACACGAATAGGGA
ATAATACAAAGGACGTGTACGTGAAGTAATATACATGATATGATACGGAT
ATGGAGTACCGTCCAACTGCTTAATTAATTGGCGGGTTGAATTTATATGC
CGGCAAGGCATTCCGGTGGGGGTACTGGGTATCTTGATTTATCAGTGCAA
TAATCATAGATCATGTGGTTGAGACGAACCCATCTGTATCTTCTTGCTTC
CATGGCGGTGAGGGCTTGATAATTATTTGCCTCCCACCAGTTACCTGGGT
TCGAGGCACAGTTTGCTGGTCCAGGAACTGGGCAGCCCTCAATATCAAAG
TCTCTGTAATAAGCATAAAAAGGAGCTTTGCTCCAATCTATTTTCTCTAG
ACCACCTCTTGTTGCCCAGTCATCTGCTTCCCACAGCGTTGAATACACCC
CCATGGGTTGGTTCATTGGAAATGGAGCCCTTCCACTGTTTTTGTAAACC
CTGATGGGCACATCATCCACATAGAAGACAATATGGTGATGGTTCCAGAG
AATAGTGTAAAGGTGATAATCTGCAGCAGGGTCAAACCAGAGTTCACTCT
CTGGTCTCTATCGCCTTTNCATTTGCATAGATATTGGTCTGGACGTGTAA
AGCTGACCCGTTCGGTTCCCAGGAACTCAAA
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