EY665055

Overview
NameEY665055
Unique NameEY665055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665055 vs. ExPASy Swiss-Prot
Match: ABCC8_HUMAN (ATP-binding cassette transporter sub-family C member 8 OS=Homo sapiens GN=ABCC8 PE=1 SV=5)

HSP 1 Score: 89.3521 bits (220), Expect = 3.143e-17
Identity = 48/158 (30.38%), Postives = 89/158 (56.33%), Query Frame = 2
Query:  104 VVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIXAFEXEDXF 577
            +V+ ++  +  +  +  S++    G++ +K L   LLN +  APM F+++TPLG +L+R SSD + +D  +P +L     +T    S L V++ VT   L   +P+  +   +Q+Y+   +++L +L+ TT+  + +H AE++ G  TI AF  E  F
Sbjct: 1065 MVFTVLCSLGIVLCLVTSVTVEWTGLKVAKRLHRSLLNRIILAPMRFFETTPLGSILNRFSSDCNTIDQHIPSTLECLSRSTLLCVSALAVISYVTPVFLVALLPLAIVCYFIQKYFRVASRDLQQLDDTTQLPLLSHFAETVEGLTTIRAFRYEARF 1222          
BLAST of EY665055 vs. ExPASy Swiss-Prot
Match: ABCC8_DICDI (ABC transporter C family member 8 OS=Dictyostelium discoideum GN=abcC8 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.228e-17
Identity = 50/154 (32.47%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  101 IVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIXAFE 562
            I V    G ++  FL  RS S V   I+ SK    ++  ++  +PMSF+D+TP+GR+L+R S D   +D  +  +L   +        ++ V+A V+  ++   +PV  L   +Q+YY  +++EL RL G ++S +  H +E++AG  TI AF+
Sbjct: 1070 IYVAFSCGTIAATFL--RSFSMVFGSIKGSKLFHEKMFKAVILSPMSFFDTTPIGRILNRFSKDQLTIDESIARTLGMFLNTFCQVVGSIIVIAWVSPFIILAMVPVGALFYFIQKYYLNSSRELTRLEGVSRSPIYAHFSETLAGVTTIRAFK 1221          

HSP 2 Score: 20.7866 bits (42), Expect = 4.228e-17
Identity = 7/25 (28.00%), Postives = 13/25 (52.00%), Query Frame = 3
Query:  576 FFAKNLDLIDTNASPFFQTFAANEW 650
            F  +N  L+D N   ++   ++N W
Sbjct: 1226 FVTENERLLDENQKCYYINISSNRW 1250          
BLAST of EY665055 vs. ExPASy Swiss-Prot
Match: MRP4_HUMAN (Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 7.001e-17
Identity = 49/162 (30.25%), Postives = 95/162 (58.64%), Query Frame = 2
Query:  107 VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGV-LAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIXAFEXEDXFFCKE 589
            +Y  +   + LF ++RSL    + + SS++L +++  S+ +AP+ F+D  P+GR+L+R S D+  +D  +P + +  +         + V +AV+ W +    +P+  + I L+RY+  T++++ RL  TT+S V +HL+ S+ G  TI A++ E+   C+E
Sbjct:  767 IYSGLTVATVLFGIARSLLVFYVLVNSSQTLHNKMFESILKAPVLFFDRNPIGRILNRFSKDIGHLDDLLPLTFLDFIQTLLQVVGVVSVAVAVIPW-IAIPLVPLGIIFIFLRRYFLETSRDVKRLESTTRSPVFSHLSSSLQGLWTIRAYKAEER--CQE 925          
BLAST of EY665055 vs. ExPASy Swiss-Prot
Match: MRP1_CANFA (Multidrug resistance-associated protein 1 OS=Canis familiaris GN=ABCC1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.001e-17
Identity = 51/188 (27.13%), Postives = 99/188 (52.66%), Query Frame = 2
Query:   29 IGQILQNSWLAANVENPNVS-----TLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIXAFEXEDXF 577
            +  ++ N WL+   ++P V+     T   + VY  +G    + +   S++  + GI +S+ L   LL ++ R+PMSF++ TP G +++R S +L  VD  +P  +   +G+  N      ++ + T     +  P+  +   +QR+Y A++++L RL   ++S V +H  E++ G   I AFE ++ F
Sbjct:  987 VASLVSNYWLSLWTDDPIVNGTQEHTKIRLSVYGALGISQGITVFGYSMAVSIGGIFASRRLHVDLLQNVLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPQVIKMFMGSLFNVIGACIIILLATPIASIIIPPLGLIYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERF 1174          
BLAST of EY665055 vs. ExPASy Swiss-Prot
Match: MRP1_BOVIN (Multidrug resistance-associated protein 1 OS=Bos taurus GN=ABCC1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.001e-17
Identity = 50/188 (26.60%), Postives = 100/188 (53.19%), Query Frame = 2
Query:   29 IGQILQNSWLAANVENPNVS-----TLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIXAFEXEDXF 577
            +  ++ N WL+   ++P V+     T   + VY  +G    + +   S++  + GI +S+ L   LL+++ R+P+SF++ TP G +++R S +L  VD  +P  +   +G+  N      ++ + T     +  P+  +   +QR+Y A++++L RL   ++S V +H  E++ G   I AFE ++ F
Sbjct:  986 VASLVSNYWLSLWTDDPIVNGTQEHTQVRLSVYGALGISQGITVFGYSMAVSIGGIFASRRLHLDLLHNVLRSPISFFERTPSGNLVNRFSKELDTVDSMIPQVIKMFMGSLFNVIGACIIILLATPMAAVIIPPLGLIYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERF 1173          
BLAST of EY665055 vs. ExPASy Swiss-Prot
Match: ABCC8_RAT (ATP-binding cassette transporter sub-family C member 8 OS=Rattus norvegicus GN=Abcc8 PE=1 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 7.001e-17
Identity = 46/134 (34.33%), Postives = 78/134 (58.21%), Query Frame = 2
Query:  176 GIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIXAFEXEDXF 577
            G++ +K L   LLN +  APM F+++TPLG +L+R SSD + +D  +P +L     +T    S L V++ VT   L   +P+  +   +Q+Y+   +++L +L+ TT+  + +H AE++ G  TI AF  E  F
Sbjct: 1090 GLKVAKRLHRSLLNRIILAPMRFFETTPLGSILNRFSSDCNTIDQHIPSTLECLSRSTLLCVSALAVISYVTPVFLVALLPLAVVCYFIQKYFRVASRDLQQLDDTTQLPLLSHFAETVEGLTTIRAFRYEARF 1223          
BLAST of EY665055 vs. ExPASy Swiss-Prot
Match: MRP3_RAT (Canalicular multispecific organic anion transporter 2 OS=Rattus norvegicus GN=Abcc3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.560e-16
Identity = 53/177 (29.94%), Postives = 100/177 (56.50%), Query Frame = 2
Query:   47 NSWLAA---NVEN---PNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIXAF 559
            N WL+A   +VE     N +++RL  VY  +G +  L +M  + + VV  I++++ L + LL++  RAP SF+D+TP GR+L+R S D+ ++   +  +++    +   + S + V+   T     V +P+      +QR+Y AT+++L RL   ++S + +H +E++ G   I A+
Sbjct:  984 NVWLSAWTNDVEEHGQQNNTSVRL-GVYATLGILQGLLVMLSAFTMVVGAIQAARLLHTALLHNQIRAPQSFFDTTPSGRILNRFSKDIYVIHEVLAPTILMLFNSFYTSISTIVVIVASTPLFCVVVLPLAVFYGFVQRFYVATSRQLKRLESVSRSPIFSHFSETVTGTSVIRAY 1159          
BLAST of EY665055 vs. ExPASy Swiss-Prot
Match: AB11C_ARATH (ABC transporter C family member 11 OS=Arabidopsis thaliana GN=ABCC11 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.560e-16
Identity = 50/189 (26.46%), Postives = 97/189 (51.32%), Query Frame = 2
Query:   14 HLTFVIGQILQNSWLAANVENPNVSTLR---LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIXAFEXED 571
            +LT  + ++L ++WL+   +     +      IVVY L+GF       + S   +   + ++K L   +LNS+ RAPM F+++ P GRV++R S D+  +D +V   +   +       S   ++ +V+   L+  +P++ L      YY +T++E+ RL+  T+S +     E++ G  +I A++  D
Sbjct:  921 YLTTEVLRVLSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFETNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGIVSTISLWAIMPLLILFYATYIYYQSTSREVRRLDSVTRSPIYALFGEALNGLSSIRAYKAYD 1109          
BLAST of EY665055 vs. ExPASy Swiss-Prot
Match: ABCC9_RABIT (ATP-binding cassette transporter sub-family C member 9 OS=Oryctolagus cuniculus GN=ABCC9 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.559e-16
Identity = 53/181 (29.28%), Postives = 96/181 (53.04%), Query Frame = 2
Query:   53 WLAANVENPNVS-TLRLIVVYLLIGFV----STLFL-MSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIXAFEXEDXF 577
            WLA      +++ T +    Y + GF     + +FL +  SL+   +G+ ++K+L   LLN +   P+ F+D+TPLG +L+R S+D +I+D  +P +L     +T    S +G+++  T   L   +P+      +Q+Y+   +K+L  L+ +T+  +  H +E+  G  TI AF  E  F
Sbjct: 1014 WLATWTSEYSINNTGKADQTYYVAGFSILCGAGIFLCLVTSLTVEWMGLTAAKNLHHNLLNKIILGPIRFFDTTPLGLILNRFSADTNIIDQHIPPTLESLTRSTLLCLSAIGMISYATPVFLVALVPLGVAFYFIQKYFRVASKDLQELDDSTQLPLLCHFSETAEGLTTIRAFRHEARF 1194          

HSP 2 Score: 23.483 bits (49), Expect = 7.559e-16
Identity = 11/32 (34.38%), Postives = 16/32 (50.00%), Query Frame = 3
Query:  561 RXKIXFFAKNLDLIDTNASPFFQTFAANEWXD 656
            R +  F  + L+L DTN   +    AAN W +
Sbjct: 1189 RHEARFKQRMLELTDTNNIAYLFLSAANRWLE 1220          
BLAST of EY665055 vs. ExPASy Swiss-Prot
Match: ABCC9_HUMAN (ATP-binding cassette transporter sub-family C member 9 OS=Homo sapiens GN=ABCC9 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 7.559e-16
Identity = 53/181 (29.28%), Postives = 96/181 (53.04%), Query Frame = 2
Query:   53 WLAANVENPNVS-TLRLIVVYLLIGFV----STLFL-MSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIXAFEXEDXF 577
            WLA      +++ T +    Y + GF     + +FL +  SL+   +G+ ++K+L   LLN +   P+ F+D+TPLG +L+R S+D +I+D  +P +L     +T    S +G+++  T   L   +P+      +Q+Y+   +K+L  L+ +T+  +  H +E+  G  TI AF  E  F
Sbjct: 1014 WLATWTSEYSINNTGKADQTYYVAGFSILCGAGIFLCLVTSLTVEWMGLTAAKNLHHNLLNKIILGPIRFFDTTPLGLILNRFSADTNIIDQHIPPTLESLTRSTLLCLSAIGMISYATPVFLVALLPLGVAFYFIQKYFRVASKDLQELDDSTQLPLLCHFSETAEGLTTIRAFRHETRF 1194          

HSP 2 Score: 23.483 bits (49), Expect = 7.559e-16
Identity = 11/32 (34.38%), Postives = 16/32 (50.00%), Query Frame = 3
Query:  561 RXKIXFFAKNLDLIDTNASPFFQTFAANEWXD 656
            R +  F  + L+L DTN   +    AAN W +
Sbjct: 1189 RHETRFKQRMLELTDTNNIAYLFLSAANRWLE 1220          
The following BLAST results are available for this feature:
BLAST of EY665055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
ABCC8_HUMAN3.143e-1730.38ATP-binding cassette transporter sub-family C memb... [more]
ABCC8_DICDI4.228e-1732.47ABC transporter C family member 8 OS=Dictyostelium... [more]
MRP4_HUMAN7.001e-1730.25Multidrug resistance-associated protein 4 OS=Homo ... [more]
MRP1_CANFA7.001e-1727.13Multidrug resistance-associated protein 1 OS=Canis... [more]
MRP1_BOVIN7.001e-1726.60Multidrug resistance-associated protein 1 OS=Bos t... [more]
ABCC8_RAT7.001e-1734.33ATP-binding cassette transporter sub-family C memb... [more]
MRP3_RAT1.560e-1629.94Canalicular multispecific organic anion transporte... [more]
AB11C_ARATH1.560e-1626.46ABC transporter C family member 11 OS=Arabidopsis ... [more]
ABCC9_RABIT7.559e-1629.28ATP-binding cassette transporter sub-family C memb... [more]
ABCC9_HUMAN7.559e-1629.28ATP-binding cassette transporter sub-family C memb... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665055 ID=EY665055; Name=EY665055; organism=Citrus sinensis; type=EST; length=903bp
AGCCAGCCTCTCTCACCTTACATTTGTGATTGGTCAGATATTGCAGAACT
CTTGGCTGGCTGCCAATGTAGAAAATCCTAATGTCAGCACATTACGGCTG
ATAGTGGTTTACTTGTTGATTGGATTTGTCTCAACACTATTCCTGATGTC
TAGATCTCTCTCTAGTGTTGTTTTAGGTATTAGATCATCAAAATCTTTGT
TCTCACAGCTTTTAAATTCCCTTTTCCGTGCACCTATGTCTTTTTACGAC
TCCACACCTCTTGGAAGGGTACTTAGTCGGGTTTCTTCTGATCTGAGTAT
TGTCGACCTAGATGTTCCATTCAGTTTAATCTTTGCTGTCGGGGCTACCA
CAAATGCTTATAGTAATCTAGGAGTACTTGCTGTTGTCACATGGCAAGTC
CTATTCGTTTCCATACCAGTGATTTTCTTGGCAATTCGCTTGCAGAGATA
CTATTTTGCTACTGCAAAAGAATTGATGCGGCTTAACGGCACAACCAAGT
CCTTGGTAGCAAATCATCTAGCTGAGTCTATAGCAGGAGCCATGACAATT
ANGGCTTTTGAGGANGAAGATCNGTTTTTTTGCAAAGAACCTTGACCTCA
TTGATACCAATGCCAGTCCTTTCTTCCAAACTTTTGCAGCAAATGAGTGG
GNTGATCCAACGCCCTAGAACACTCAGTGCAACNNTGTATATCCTCGCAG
CATTCTGTATGGTTTTGCTTNCTNCTGNAACTTTTACCCCTGNATTNATT
NGAATGGCCCTTTCTTATGGTCTTCGTTAAACAGTCCCTAGTATGTCAAT
CCAAAACAGTGTACTCTANCAATTATATCATTCTGTAAAAGACTTTACCA
TACTGCATGTACCAGTGAAGCCCTGAGTAGTAGAAACAACCGCCCCACCA
CTG
back to top