EY665040

Overview
NameEY665040
Unique NameEY665040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA3_BURS3 (Serine hydroxymethyltransferase 3 OS=Burkholderia sp. (strain 383) GN=glyA3 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.487e-46
Identity = 104/251 (41.43%), Postives = 144/251 (57.37%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGNKLKDFVGHTQSANXQXEIAKLRHDVEEYAKHXP 751
            ++ DMAH +GL+AAGV P+P  +AD VTTTTHKSLRGPRG +I  +               +YE+ IN A+FPG+QGGP  H I G AVA K+A +PE+KAYQE+V+ N    A+TL++ G  +VSG TE+H++LV+L+ K I G   E  L A HI  NKN +P D     V  G+R+G+PA+T+ GF   +  +V                   GN + D + + + A     I ++R  V E  K  P
Sbjct:  198 LMVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVILMKA--------------EYEKPINSAIFPGIQGGPLMHVIAGKAVAFKEALSPEFKAYQEKVVENARVLAETLVKRGLRIVSGRTESHVMLVDLRAKHITGKAAEAALGAAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGFGPAEAEQV-------------------GNLIADVLDNPEDA---ATIERVRAQVAELTKRFP 412          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_SYNPW (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain WH7803) GN=glyA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.942e-46
Identity = 99/198 (50.00%), Postives = 131/198 (66.16%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            +LADMAHI+GLVAAGV PSP  + DVVTTTTHK+LRGPRG +I  R               ++ +K ++AVFPG QGGP  H I   AVA  +A  P +KAY +QV++N    A  L+  G ++VSGGT+NH+VL++L++ G+ G   + ++  VHI ANKNTVP D  S  V  G+R+GT ALT+ GF  D FA+VA
Sbjct:  203 LLADMAHIAGLVAAGVHPSPVPHCDVVTTTTHKTLRGPRGGLILCRDA-------------EFAKKFDKAVFPGSQGGPLEHVIAAKAVAFGEALRPAFKAYSQQVVANAQALADRLMARGIDVVSGGTDNHVVLLDLRSIGMTGKVADLLVSDVHITANKNTVPFDPESPFVTSGLRLGTAALTTRGFDADAFAEVA 387          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_METCA (Serine hydroxymethyltransferase OS=Methylococcus capsulatus GN=glyA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.942e-46
Identity = 96/189 (50.79%), Postives = 124/189 (65.61%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGF 565
            ++ DMAH++GL+AAG+ PSP + ADV TTTTHK+LRGPRG +I        + K   EV    E+++N  VFPG+QGGP  H I   AVALK+A  P+++ YQ  V+ N    A+T +E GY +VSGGT NHL LV+L  KG+ G   E+VL   HI  NKN VP D  S  V  GIR+GTPA+T+ GF
Sbjct:  198 LMVDMAHVAGLIAAGLYPSPVQIADVTTTTTHKTLRGPRGGLI--------LAKANPEV----EKQLNSLVFPGIQGGPLMHVIAAKAVALKEALQPDFRHYQSAVMENADAMAKTFIERGYRIVSGGTRNHLFLVDLIQKGLTGKLAEEVLGRAHITVNKNAVPNDPQSPFVTSGIRVGTPAVTTRGF 374          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_DIAST (Serine hydroxymethyltransferase OS=Diaphorobacter sp. (strain TPSY) GN=glyA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.942e-46
Identity = 94/190 (49.47%), Postives = 124/190 (65.26%), Query Frame = 2
Query:   11 DMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDD 577
            D+AH +GLV AG  P+P  +ADVVT+TTHKSLRGPRG +I  +               ++E+ IN A+FPGLQGGP  H I   AVA K+A +PE+K YQ+QV  N   FA+TL++ G  +VSG TE+H++LV+L+ KGI G   E  L   HI  NKN +P D    MV  GIR+GTPA+T+ GF E++
Sbjct:  200 DIAHYAGLVVAGEYPNPVPFADVVTSTTHKSLRGPRGGIILMKA--------------EHEKAINSAIFPGLQGGPLEHVIAAKAVAFKEALSPEFKQYQQQVTKNAKVFAETLIQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAALGKAHITINKNAIPNDPEKPMVTSGIRVGTPAITTRGFKEEE 375          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_DESDG (Serine hydroxymethyltransferase OS=Desulfovibrio desulfuricans (strain G20) GN=glyA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.942e-46
Identity = 109/252 (43.25%), Postives = 147/252 (58.33%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVA-YFFDAAVKLAVKIKSXTQGNKLKDFVGHTQSANXQXEIAKLRHDVEEYAKHXP 751
            ++ DMAHI+GLVAAG+ PSP   A   TTTTHK+LRGPRG MI   +              +  +K+N  +FPG+QGGP  H I   AVA  +A  PE+ AYQ+QV++N +K A TL + G+ELVSGGT+NHL+LV+L NK I G   +  L+   I ANKNTVP +  S  V  GIR+GTPALT+ G  E +  KVA +  DA   +         GN+ +              +A++  DVE++A+  P
Sbjct:  194 LMVDMAHIAGLVAAGLHPSPVGTAHFTTTTTHKTLRGPRGGMILSDE--------------EAAKKLNSQIFPGIQGGPLMHVIAAKAVAFGEALRPEFGAYQKQVVANAAKLAATLTDAGFELVSGGTDNHLMLVDLTNKDITGKDAQHALDLAGITANKNTVPFETRSPFVTSGIRLGTPALTTRGMKEAEMVKVAGWIIDALGNI---------GNETR--------------LAEISRDVEKFARQFP 408          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_COXBU (Serine hydroxymethyltransferase OS=Coxiella burnetii GN=glyA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.942e-46
Identity = 94/199 (47.24%), Postives = 128/199 (64.32%), Query Frame = 2
Query:    5 LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVAYF 598
            + D+AH++GLVAAGV PSP + ADV TTTTHK+LRGPR  +I  +               + E+++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+ GF E + +++A++
Sbjct:  198 MTDIAHVAGLVAAGVYPSPVQIADVTTTTTHKTLRGPRAGLILAKANP------------ELEKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_COXBR (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=glyA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.942e-46
Identity = 94/199 (47.24%), Postives = 128/199 (64.32%), Query Frame = 2
Query:    5 LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVAYF 598
            + D+AH++GLVAAGV PSP + ADV TTTTHK+LRGPR  +I  +               + E+++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+ GF E + +++A++
Sbjct:  198 MTDIAHVAGLVAAGVYPSPVQIADVTTTTTHKTLRGPRAGLILAKANP------------ELEKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_COXBN (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=glyA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.942e-46
Identity = 94/199 (47.24%), Postives = 128/199 (64.32%), Query Frame = 2
Query:    5 LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVAYF 598
            + D+AH++GLVAAGV PSP + ADV TTTTHK+LRGPR  +I  +               + E+++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+ GF E + +++A++
Sbjct:  198 MTDIAHVAGLVAAGVYPSPVQIADVTTTTTHKTLRGPRAGLILAKANP------------ELEKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_COXB1 (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain CbuK_Q154) GN=glyA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.942e-46
Identity = 94/199 (47.24%), Postives = 128/199 (64.32%), Query Frame = 2
Query:    5 LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVAYF 598
            + D+AH++GLVAAGV PSP + ADV TTTTHK+LRGPR  +I  +               + E+++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+ GF E + +++A++
Sbjct:  198 MTDIAHVAGLVAAGVYPSPVQIADVTTTTTHKTLRGPRAGLILAKANP------------ELEKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_ACISJ (Serine hydroxymethyltransferase OS=Acidovorax sp. (strain JS42) GN=glyA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.942e-46
Identity = 94/190 (49.47%), Postives = 124/190 (65.26%), Query Frame = 2
Query:   11 DMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDD 577
            D+AH +GLV AG  P+P  +ADVVT+TTHKSLRGPRG +I  +               ++E+ IN A+FPGLQGGP  H I   AVA K+A +PE+K YQ+QV  N   FA+TL++ G  +VSG TE+H++LV+L+ KGI G   E  L   HI  NKN +P D    MV  GIR+GTPA+T+ GF E++
Sbjct:  200 DIAHYAGLVVAGEYPNPVPFADVVTSTTHKSLRGPRGGIILMKA--------------EHEKAINSAIFPGLQGGPLEHVIAAKAVAFKEALSPEFKQYQQQVTKNAKVFAETLIQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAALGKAHITINKNAIPNDPEKPMVTSGIRVGTPAITTRGFKEEE 375          
The following BLAST results are available for this feature:
BLAST of EY665040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA3_BURS31.487e-4641.43Serine hydroxymethyltransferase 3 OS=Burkholderia ... [more]
GLYA_SYNPW1.942e-4650.00Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_METCA1.942e-4650.79Serine hydroxymethyltransferase OS=Methylococcus c... [more]
GLYA_DIAST1.942e-4649.47Serine hydroxymethyltransferase OS=Diaphorobacter ... [more]
GLYA_DESDG1.942e-4643.25Serine hydroxymethyltransferase OS=Desulfovibrio d... [more]
GLYA_COXBU1.942e-4647.24Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_COXBR1.942e-4647.24Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_COXBN1.942e-4647.24Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_COXB11.942e-4647.24Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_ACISJ1.942e-4649.47Serine hydroxymethyltransferase OS=Acidovorax sp. ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665040 ID=EY665040; Name=EY665040; organism=Citrus sinensis; type=EST; length=922bp
AATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCA
TCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAA
TCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAA
AGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAA
TAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACA
ATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAA
AGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCAAAATTTGCACAGACTC
TGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTA
GTGTTGGTGAATTTGAAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAA
AGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGG
ATGTGTCGGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTT
ACTTCTANGGGATTTGTTGAGGATGATTTTGCCAAGGTAGCATATTTCTT
TGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGNAACTCAAGGAA
ACAAGTTGAAAGATTTCGTGGGCCACACACAGTCCGCTAACTTNCAATNC
GAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCATTNCCC
CACATTGGGGTTGAAAAGGGATACATGAAAGTCCAGAACTGAAAGAAAAC
GCCACTGTACTANAGTAGCGGGAGCCAGCCTGTATGAGCTTTTATTACAC
AGAGCNACGAGGGATGAAATGTNACTACGATGATGAGCCATGGATCACTA
TTGACCCTGGGATTTGCGGCTT
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