EY665040

Overview
NameEY665040
Unique NameEY665040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 8.981e-60
Identity = 118/246 (47.97%), Postives = 165/246 (67.07%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGNKLKDFVGHTQSANXQXEIAKLRHDVEEYA 739
            +L DMAHISG+VA     SPF + DVVTTTTHK+LRGPR  +IFFRK  K  + +G  +  D E +IN AVFP  QGGPH +TI G+AVALK+A++P+++ Y +QV  N     + L + GY LV+ GT+NHLVL +L+ +GI GS++EK  +  HI  NKN V GD +A+ PGG+R+G PALTS G  E DF KV  F D  VK+++ I+S   G K+ DF    ++     ++ ++R +V+E++
Sbjct:  232 LLCDMAHISGMVAGKQAISPFLFCDVVTTTTHKTLRGPRAGLIFFRK-TKRRDAKGNIIDDDLENRINFAVFPSCQGGPHENTIAGIAVALKEASSPDFQEYTKQVRRNSQTMGEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKV-GKKMPDF---QRAIADNQDLKQIRQEVKEFS 472          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_CALS8 (Serine hydroxymethyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.619e-51
Identity = 102/198 (51.52%), Postives = 138/198 (69.70%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            ++ DMAHI+GLVAAG+ PSP EYAD VTTTTHK+LRGPRG +I  ++               Y + I++++FPG+QGGP  H I   AVALK+A T E++ YQ Q+L N    ++ L+E G+ LVSGGT+NHL+LV+L+NKGI G   EK L++++I  NKN +P D  S MV  GIR+GTPA+T+ GF E+D  +VA
Sbjct:  199 LMVDMAHIAGLVAAGLHPSPVEYADFVTTTTHKTLRGPRGGLILCKE--------------KYAKLIDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFRNYQIQILKNAKALSERLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKRLDSLNITCNKNAIPFDTQSPMVTSGIRLGTPAVTTRGFKEEDMIEVA 382          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_ANATD (Serine hydroxymethyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glyA PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.467e-51
Identity = 103/198 (52.02%), Postives = 135/198 (68.18%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            ++ DMAHI+GLVAAG+ PSP EYAD VTTTTHK+LRGPRG +I  ++               Y + I++++FPG+QGGP  H I   AVALK+A T E+K YQ Q+L N    +  L+E G+ LVSGGT+NHL+LV+L+NKGI G   EK+L+  +I  NKN VP D  S M+  GIR+GTPA+T+ GF E D  +VA
Sbjct:  197 LMVDMAHIAGLVAAGLHPSPVEYADFVTTTTHKTLRGPRGGLILCKE--------------KYAKLIDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFKNYQVQILKNAKALSTRLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKILDEHNITCNKNAVPFDTQSPMITSGIRLGTPAVTTRGFKEGDMLEVA 380          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_ALHEH (Serine hydroxymethyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.467e-51
Identity = 102/198 (51.52%), Postives = 133/198 (67.17%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            +L DMAH++GLVAAGV PSP + ADV TTTTHK+LRGPRG +I  R               + E+K+N  VFPG QGGP  H I G AVA K+A  PE+KAYQ+QV++N    AQ L+E GY++VSGGT+NHL L++L +KG+ G   +  L   HI  NKNTVP D  S  V  G+R+GTPA+T+ GF E++  ++A
Sbjct:  198 LLVDMAHVAGLVAAGVYPSPVQIADVTTTTTHKTLRGPRGGLILARANA------------EVEKKLNSLVFPGTQGGPLMHAIAGKAVAFKEALEPEFKAYQQQVVANARAMAQGLIERGYKVVSGGTDNHLFLIDLVDKGLTGKAADAALGKAHITVNKNTVPNDPQSPFVTSGLRIGTPAITTRGFKEEECRELA 383          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_NATTJ (Serine hydroxymethyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glyA PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.698e-50
Identity = 97/205 (47.32%), Postives = 140/205 (68.29%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAV 613
            ++ DMAHI+GLVAAG+ P+P  YAD VTTTTHK+LRGPRG ++  ++              +Y+++I++A+FPGLQGGP  H I   AV+ ++A + E+K YQ+QV+ N S  A  L  +GY+LV+GG++NHL+LV+L+ KG+ G + E+VL+ VHI  NKN VP D     V  G+R+GTPA+T+ GF ED+  +VA   D  +
Sbjct:  194 LMVDMAHIAGLVAAGLHPNPVPYADFVTTTTHKTLRGPRGGVVLCKE--------------EYKKEIDKAMFPGLQGGPLMHVIASKAVSFQEALSSEFKNYQKQVIKNASVLADELNNLGYDLVAGGSDNHLMLVDLQKKGVTGKKAERVLDDVHITVNKNAVPNDPEGPFVTSGLRLGTPAVTTRGFAEDEIKEVAQLLDKVI 384          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_DICT6 (Serine hydroxymethyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=glyA PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.100e-49
Identity = 110/250 (44.00%), Postives = 150/250 (60.00%), Query Frame = 2
Query:    5 LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGNKLKDFVGHTQSANXQXEIAKLRHDVEEYAKHXP 751
            + DMAHI+GLVAAG+ PSP  YA  VT+TTHK+LRGPRG  I  +K              ++ ++I++AVFPG+QGGP  H I   AVA K+A TPE+K YQ+Q++ N    A+ L+ +GY LVSGGT+NHL+LV+L++KGI G   EK LE   I  NKN +P D     V  GIR+GTPALT+ G  ED+   VA       +L  ++ S  + +K+K+               K++ +VEE  K  P
Sbjct:  195 MVDMAHIAGLVAAGLHPSPVPYAHFVTSTTHKTLRGPRGGFILCKK--------------EFAKEIDKAVFPGIQGGPLMHVIAAKAVAFKEAMTPEFKEYQKQIILNAKAMAEELMRLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTVTSGIRIGTPALTTRGMKEDEMRYVA-------RLIHEVLSNFKDSKVKE---------------KVKKEVEELCKQFP 408          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.437e-49
Identity = 102/206 (49.51%), Postives = 135/206 (65.53%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVK 616
            ++ DMAHI+GLVAAG+  SP  YADVVTTTTHK+LRGPRG +I  +   +            Y  KIN+AVFPG+QGGP  H I   AVA K+A  P +K YQ +++SN    A  LLE G+ELVSGGT+NHL+LV+L++K I G   +++ +AV +  NKN VP D     +  GIR+GTPA+TS G  EDD  ++A   D A++
Sbjct:  197 LMVDMAHIAGLVAAGLHMSPVPYADVVTTTTHKTLRGPRGGLILCKDAER------------YGTKINRAVFPGVQGGPLMHVIAAKAVAFKEAMEPGFKEYQRKIVSNARALADALLERGFELVSGGTDNHLILVDLRSKKITGREAQELFDAVGVTVNKNAVPFDPQPPNIASGIRIGTPAVTSRGLNEDDMVQIAEIMDYAIE 390          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_METTP (Serine hydroxymethyltransferase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=glyA PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.437e-49
Identity = 100/198 (50.51%), Postives = 136/198 (68.69%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            ++AD+AHI+GLVAAGV PSP  YAD+VTTTTHK+LRGPRG +I  R+              +  + I++AVFPG+QGGP  HTI   AVA K+A TPE++ YQEQ++ N +  A  L+E G++LVSGGT+NHL+LV L  +GI G   ++ LE+  IA NKN +P D  +  V  GIR+GTPA+TS G  E++  ++A
Sbjct:  194 LMADIAHIAGLVAAGVHPSPIPYADIVTTTTHKTLRGPRGGVIMCRE--------------ELAQAIDRAVFPGIQGGPMMHTIAAKAVAFKEAMTPEFRRYQEQIVRNAAALADRLIENGFDLVSGGTDNHLMLVKLLKEGITGKEADETLESAGIALNKNMIPFDPRTPFVTSGIRIGTPAVTSRGMKENEMREIA 377          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.202e-49
Identity = 101/195 (51.79%), Postives = 130/195 (66.67%), Query Frame = 2
Query:   11 DMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            DMAHI+GLVAAG+  SP  YADVVTTTTHK+LRGPRG MI  ++              +Y + I++A+FPG QGGP  H I   A A  +A  PE+KAYQ+Q+++N    A+ LLE G+ LVSGGT+NHL+LV+L+  GI G + E +L+ VHI  NKN +P D     V  GIR+GTPA+T+ GF E D  KVA
Sbjct:  199 DMAHIAGLVAAGLHQSPVPYADVVTTTTHKTLRGPRGGMILCKE--------------EYAQLIDKAIFPGSQGGPLMHVIAAKAAAFGEALKPEFKAYQQQIINNAQALAKGLLERGFNLVSGGTDNHLILVDLRGTGITGKQAETLLDEVHITCNKNAIPFDPEKPFVTSGIRLGTPAVTTRGFKEKDMDKVA 379          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_CLOAB (Serine hydroxymethyltransferase OS=Clostridium acetobutylicum GN=glyA PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.181e-49
Identity = 99/206 (48.06%), Postives = 137/206 (66.50%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVK 616
            M+ DMAHI+GLVAAG+ PSP  YAD VTTTTHK+LRGPRG  IF ++               Y + I+++VFPG+QGGP  H I G AV   +A   ++K Y +Q+++N   FA  L + G+ +VSGGT+NHL+LV+L NK I G   E +L++V I ANKNT+P +  S  +  GIRMGTP++T+ GF E++  KVAYF +  ++
Sbjct:  196 MMVDMAHIAGLVAAGLHPSPIPYADFVTTTTHKTLRGPRGGAIFCKE--------------KYAKDIDKSVFPGMQGGPLMHIIAGKAVCFGEALKDDFKDYAQQIVNNAKVFADELTKYGFRIVSGGTDNHLLLVDLTNKNITGKDAEHLLDSVGITANKNTIPFEKKSPFITSGIRMGTPSVTTRGFKEEEMKKVAYFINYVIE 387          
The following BLAST results are available for this feature:
BLAST of EY665040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI8.981e-6047.97Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYA_CALS82.619e-5151.52Serine hydroxymethyltransferase OS=Caldicellulosir... [more]
GLYA_ANATD4.467e-5152.02Serine hydroxymethyltransferase OS=Anaerocellum th... [more]
GLYA_ALHEH4.467e-5151.52Serine hydroxymethyltransferase OS=Alkalilimnicola... [more]
GLYA_NATTJ1.698e-5047.32Serine hydroxymethyltransferase OS=Natranaerobius ... [more]
GLYA_DICT61.100e-4944.00Serine hydroxymethyltransferase OS=Dictyoglomus th... [more]
GLYA_PELTS1.437e-4949.51Serine hydroxymethyltransferase OS=Pelotomaculum t... [more]
GLYA_METTP1.437e-4950.51Serine hydroxymethyltransferase OS=Methanosaeta th... [more]
GLYA_DESRM3.202e-4951.79Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_CLOAB4.181e-4948.06Serine hydroxymethyltransferase OS=Clostridium ace... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665040 ID=EY665040; Name=EY665040; organism=Citrus sinensis; type=EST; length=922bp
AATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCA
TCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAA
TCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAA
AGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAA
TAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACA
ATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAA
AGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCAAAATTTGCACAGACTC
TGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTA
GTGTTGGTGAATTTGAAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAA
AGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGG
ATGTGTCGGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTT
ACTTCTANGGGATTTGTTGAGGATGATTTTGCCAAGGTAGCATATTTCTT
TGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGNAACTCAAGGAA
ACAAGTTGAAAGATTTCGTGGGCCACACACAGTCCGCTAACTTNCAATNC
GAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCATTNCCC
CACATTGGGGTTGAAAAGGGATACATGAAAGTCCAGAACTGAAAGAAAAC
GCCACTGTACTANAGTAGCGGGAGCCAGCCTGTATGAGCTTTTATTACAC
AGAGCNACGAGGGATGAAATGTNACTACGATGATGAGCCATGGATCACTA
TTGACCCTGGGATTTGCGGCTT
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