EY665040

Overview
NameEY665040
Unique NameEY665040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig809 contig Csv1_Contig809:170..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_ALKOO (Serine hydroxymethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=glyA PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.181e-49
Identity = 99/198 (50.00%), Postives = 133/198 (67.17%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            ++ DMAHI+GLVAAG+  +P +YAD VTTTTHK+LRGPRG  I  ++               Y + I++A+FPGLQGGP  H I   AV+ K+A +PE+KAYQEQV+ N +K  + L   G+ LVSGGT+NHL+L++L+NK I G   EK+L+ V +  NKNT+P D  S  V  GIR+GTPA+T+ G  EDD   +A
Sbjct:  196 LMVDMAHIAGLVAAGLHENPCDYADFVTTTTHKTLRGPRGGAILCKE--------------KYAKMIDKAIFPGLQGGPLMHVIAAKAVSFKEALSPEFKAYQEQVIKNAAKLGEELKSRGFNLVSGGTDNHLLLLDLRNKNITGKDAEKLLDEVGVTVNKNTIPYDPESPFVTSGIRIGTPAVTTRGMKEDDMVTIA 379          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 5.461e-49
Identity = 99/219 (45.21%), Postives = 147/219 (67.12%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGNKL 658
            + AD++HIS LVA+G++ SPFE+ D+V TTT K LRGPRGA+IF+R+ V    K G+ V  D + +IN AVFP LQGGPHNHTI G+A AL  A TPE+  Y  +V+ N  +    L  +G ++++GGT+NH++LV+L++ G+DG+ VE + +A+ I+ N+N + G+ S + P GIR+GT A+T+ GF  ++  +V       VKL    +  T G K+
Sbjct:  212 LFADISHISPLVASGLMNSPFEHCDIVMTTTQKGLRGPRGALIFYRRAV---TKNGETV--DLDARINFAVFPMLQGGPHNHTIAGIASALLHAGTPEFAEYTRRVVENSRELCSRLQSLGLDILTGGTDNHMLLVDLRSTGVDGAAVEHMCDALGISLNRNAIVGNSSPLSPSGIRVGTYAVTARGFGPEEMREVGDIIGGVVKLC---REMTGGRKM 422          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_STRMK (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=glyA PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.461e-49
Identity = 101/198 (51.01%), Postives = 130/198 (65.66%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            +  DMAH++GLVAAGV PSP E+A VVT+TTHK+LRGPRG +I   KG  E          D  +K+   VFPG+QGGP  H I G AVA K+A  P +KAYQ+QV+ N    A TL+E GY++VSGGT+NHL+LV++  K + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+ G+VE D   +A
Sbjct:  197 LFVDMAHVAGLVAAGVYPSPLEHAHVVTSTTHKTLRGPRGGIIV-AKGADE----------DLVKKLQSIVFPGIQGGPLMHVIAGKAVAFKEALEPGFKAYQQQVVKNAQAMANTLIERGYKIVSGGTQNHLMLVDMIGKDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAVTTRGYVEQDCVDLA 383          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB8 (Serine hydroxymethyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=glyA PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.461e-49
Identity = 97/206 (47.09%), Postives = 134/206 (65.05%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVK 616
            ++ DMAHI+GLVAAGV PSP  Y+D VTTTTHK+LRGPRG +I  ++               Y + +N+ +FPG+QGGP  H I   AV  K+A  P +K Y E V+ NC + A+ L+  G+++VSGGT+NH+ LV+L NK I G   E +L++V I  NKNTVP +  S  V  GIR+GT A+T+ GFV+DD A++A     A++
Sbjct:  196 LMVDMAHIAGLVAAGVHPSPVPYSDFVTTTTHKTLRGPRGGLILCKE--------------KYAQILNKNIFPGIQGGPLEHIIAAKAVCFKEALDPSFKTYGENVVENCKELAEQLIARGFKIVSGGTDNHVFLVDLNNKDITGKEAEALLDSVGITVNKNTVPNETRSPFVTSGIRIGTAAITTRGFVKDDMAEIAAVISEAIE 387          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_RALPJ (Serine hydroxymethyltransferase OS=Ralstonia pickettii (strain 12J) GN=glyA PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 9.315e-49
Identity = 98/198 (49.49%), Postives = 131/198 (66.16%), Query Frame = 2
Query:    5 LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAY 595
            + DMAH +GL+AAGV P+P  +AD VTTTTHKSLRGPRG +I  +               ++E+ IN A+FPG+QGGP  H I G AVA K+A +PE+KAYQEQV+ N +  A+TL+  G  +VSG TE+H++LV+L+ K I G   EKVL   HI  NKN +P D     V  G+R+G+PA+T+ GF E +  KVA+
Sbjct:  199 MVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVILMKA--------------EHEKAINSAIFPGIQGGPLMHVIAGKAVAFKEALSPEFKAYQEQVVKNAAAMAETLMARGLRIVSGRTESHVMLVDLRAKKITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGFKEAEAVKVAH 382          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_DESPS (Serine hydroxymethyltransferase OS=Desulfotalea psychrophila GN=glyA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.217e-48
Identity = 101/205 (49.27%), Postives = 131/205 (63.90%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAV 613
            ++ DMAH +GLVA GV PSPF YADVVTTTTHKSLRGPRGAMI  +               +Y + I++AVFPG+QGGPH+ T   +AVALK+A+T  +K Y  QV+ N +  A  L+E G+ LV+GGTENHL+L++L NK I G +  K L+A  I  N N+VP D      P GIR+GT A+TS GF + +   +    D  V
Sbjct:  202 LMVDMAHFAGLVAGGVHPSPFPYADVVTTTTHKSLRGPRGAMIMCKA--------------EYAKAIDKAVFPGMQGGPHDSTTAAIAVALKEASTDSFKKYTAQVVENAASLADVLIEKGFNLVTGGTENHLMLIDLSNKNITGKQAAKALDAAGIVLNCNSVPFDKRKPFDPSGIRLGTCAITSRGFAKAEMVILGNMMDRVV 392          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_DICTD (Serine hydroxymethyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=glyA PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.589e-48
Identity = 106/250 (42.40%), Postives = 150/250 (60.00%), Query Frame = 2
Query:    5 LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGNKLKDFVGHTQSANXQXEIAKLRHDVEEYAKHXP 751
            + DMAHI+GLVAAG+ PSP  YA  VT+TTHK+LRGPRG  I  +K              ++ ++I++AVFPG+QGGP  H I   AVA K+A +PE+K YQ+Q++ N    A+ L+++GY LVSGGT+NHL+LV+L++KGI G   EK LE   I  NKN +P D     +  GIR+GTPALT+ G  ED+   +A       +L  ++ S  +  ++K+               K++ +VEE  K  P
Sbjct:  195 MVDMAHIAGLVAAGLHPSPVPYAHFVTSTTHKTLRGPRGGFILCKK--------------EFAKEIDKAVFPGIQGGPLMHVIAAKAVAFKEAMSPEFKEYQKQIVLNAKAMAEELIKLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTITSGIRIGTPALTTRGMKEDEMRYIA-------RLIHEVLSNFKDERVKE---------------KVKKEVEELCKQFP 408          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBL (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=glyA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.710e-48
Identity = 94/206 (45.63%), Postives = 135/206 (65.53%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVK 616
            M+ DMAHI+GLVA G+ PSP  YAD VTTTTHK+LRGPRG  I  ++               Y + +++A+FPG+QGGP  HTI   AV  ++A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+ GF E++  K+AYF + +++
Sbjct:  196 MMVDMAHIAGLVATGLHPSPVPYADFVTTTTHKTLRGPRGGAILCKE--------------KYAKAVDKAIFPGIQGGPLMHTIAAKAVCFREALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA1_RALSO (Serine hydroxymethyltransferase 1 OS=Ralstonia solanacearum GN=glyA1 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.710e-48
Identity = 98/198 (49.49%), Postives = 129/198 (65.15%), Query Frame = 2
Query:    5 LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAY 595
            + DMAH +GL+AAGV P+P  +AD VTTTTHKSLRGPRG +I  +               ++E+ IN A+FPG+QGGP  H I G AVA K+A +P +KAYQEQV+ N    A+TL+  G  +VSG TE+H++LV+L+ K I G   EKVL   HI  NKN +P D     V  GIR+G+PA+T+ GF E +  KVA+
Sbjct:  199 MVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVILMKA--------------EHEKAINSAIFPGIQGGPLMHVIAGKAVAFKEAQSPTFKAYQEQVVKNARAMAETLMARGLRIVSGRTESHVMLVDLRAKSITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEGEAVKVAH 382          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_STRM5 (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=glyA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.540e-48
Identity = 100/198 (50.51%), Postives = 129/198 (65.15%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            +  DMAH++GLVAAGV PSP E+A VVT+TTHK+LRGPRG +I   KG  E          D  +K+   VFPG+QGGP  H I G AVA K+A  P +KAYQ+QV+ N    A TL+  GY++VSGGT+NHL+LV++  K + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+ G+VE D   +A
Sbjct:  197 LFVDMAHVAGLVAAGVYPSPLEHAHVVTSTTHKTLRGPRGGIIV-AKGAGE----------DLVKKLQSIVFPGIQGGPLMHVIAGKAVAFKEALEPGFKAYQQQVVKNAQAMANTLIARGYKIVSGGTQNHLMLVDMIGKDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAVTTRGYVEQDCVDLA 383          
The following BLAST results are available for this feature:
BLAST of EY665040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_ALKOO4.181e-4950.00Serine hydroxymethyltransferase OS=Alkaliphilus or... [more]
GLYC_ENCCU5.461e-4945.21Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYA_STRMK5.461e-4951.01Serine hydroxymethyltransferase OS=Stenotrophomona... [more]
GLYA_CLOB85.461e-4947.09Serine hydroxymethyltransferase OS=Clostridium bei... [more]
GLYA_RALPJ9.315e-4949.49Serine hydroxymethyltransferase OS=Ralstonia picke... [more]
GLYA_DESPS1.217e-4849.27Serine hydroxymethyltransferase OS=Desulfotalea ps... [more]
GLYA_DICTD1.589e-4842.40Serine hydroxymethyltransferase OS=Dictyoglomus tu... [more]
GLYA_CLOBL2.710e-4845.63Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA1_RALSO2.710e-4849.49Serine hydroxymethyltransferase 1 OS=Ralstonia sol... [more]
GLYA_STRM53.540e-4850.51Serine hydroxymethyltransferase OS=Stenotrophomona... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665040 ID=EY665040; Name=EY665040; organism=Citrus sinensis; type=EST; length=922bp
AATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCA
TCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAA
TCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAA
AGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAA
TAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACA
ATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAA
AGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCAAAATTTGCACAGACTC
TGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTA
GTGTTGGTGAATTTGAAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAA
AGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGG
ATGTGTCGGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTT
ACTTCTANGGGATTTGTTGAGGATGATTTTGCCAAGGTAGCATATTTCTT
TGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGNAACTCAAGGAA
ACAAGTTGAAAGATTTCGTGGGCCACACACAGTCCGCTAACTTNCAATNC
GAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCATTNCCC
CACATTGGGGTTGAAAAGGGATACATGAAAGTCCAGAACTGAAAGAAAAC
GCCACTGTACTANAGTAGCGGGAGCCAGCCTGTATGAGCTTTTATTACAC
AGAGCNACGAGGGATGAAATGTNACTACGATGATGAGCCATGGATCACTA
TTGACCCTGGGATTTGCGGCTT
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