EY665040

Overview
NameEY665040
Unique NameEY665040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_THEAB (Serine hydroxymethyltransferase OS=Thermosipho africanus (strain TCF52B) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.975e-43
Identity = 95/228 (41.67%), Postives = 133/228 (58.33%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGNKLKDFVGHTQ 682
            ++ DMAH +GLVAAG+ P+P EYA +VT+TTHK+LRGPRG MI                  +  + IN+++FPG+QGGP  H I   AV  K+A T E+K YQ+QV+ N    A  L + G  +VSGGT+ HL+LV+L    + G   E  L   HI  NKNT+P +  S  +  GIR+GTPALT+ G  E +  ++A   +  V +   +K   +GN  ++ V  TQ
Sbjct:  195 LIVDMAHFAGLVAAGIYPNPAEYAHIVTSTTHKTLRGPRGGMILTNDN-------------ELYKAINKSIFPGIQGGPLMHVIAAKAVCFKEALTDEFKEYQKQVVKNAKTLAAELEKRGLRIVSGGTDTHLMLVDLNPLNVTGKAAEIALGKCHITVNKNTIPNETRSPFIASGIRLGTPALTTRGMKESEMEEIA---ELIVDVLKHVKD-EEGNVDEEIVEKTQ 405          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_PROM9 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9312) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.975e-43
Identity = 90/197 (45.69%), Postives = 129/197 (65.48%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKV 589
            ++AD+AHI+GLVA+ + P+P  Y DVVTTTTHK+LRGPRG +I  + G             ++ +K +++VFPG QGGP  H I   AVA  +A  P++  Y +QV+ N    A TL+  G ++VSGGT+NH+VL++L++  + G   + ++ AV+I ANKNTVP D  S  V  G+R+GT ALT+ GF E  FA+V
Sbjct:  197 LMADIAHIAGLVASKLHPNPLPYCDVVTTTTHKTLRGPRGGLILCKDG-------------EFGKKFDKSVFPGTQGGPLEHIIAAKAVAFGEALQPDFVNYSQQVIKNAKVLASTLISRGIDIVSGGTDNHIVLLDLRSINMTGKIADLLVSAVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFNETAFAEV 380          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_METAC (Serine hydroxymethyltransferase OS=Methanosarcina acetivorans GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.975e-43
Identity = 93/208 (44.71%), Postives = 124/208 (59.62%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLA 622
            +LAD+AHI+GLV +GV PSP  YAD VTTTTHK+LRGPRG MI  +     +              +N+AVFPG+QGGP  H I   AVA K+A   +++  Q Q + N       L E G+++VSGGT+NHL+LVNL N  I G   E  +    I ANKNTVP +  S  +  G+R+GTPA T+ G  E +   +A + + A+K A
Sbjct:  194 LLADIAHIAGLVVSGVHPSPVPYADFVTTTTHKTLRGPRGGMIISKTEELAMG-------------VNKAVFPGIQGGPLMHVIAAKAVAFKEAMDEKFRQDQAQTVKNAKVLCACLKEKGFDIVSGGTDNHLMLVNLNNMNITGKDAEAAMSKAGIIANKNTVPFETRSPFITSGVRLGTPACTTRGMKEKEMELIADYIETAIKNA 388          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_FINM2 (Serine hydroxymethyltransferase OS=Finegoldia magna (strain ATCC 29328) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.975e-43
Identity = 91/206 (44.17%), Postives = 125/206 (60.68%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVK 616
            ++ DMAHI+GLVA G  PSP  YAD VTTTTHK+LRGPRG  I  ++              ++++ ++++VFPG QGGP  H I   AV  K+   PE+K Y  Q+L N     +  L+    LVSGGT+NHL+L++ ++ G+ G   E VL  V+I  NKNT+P D  +  V  GIR+GTPA+T+ G  E +  KVA F   A+K
Sbjct:  198 LMVDMAHIAGLVATGDHPSPVPYADFVTTTTHKTLRGPRGGAILCKE--------------EHKKLLDKSVFPGFQGGPLEHIIAAKAVCFKEDLQPEFKEYTHQILKNAKAMEKVFLDNDVRLVSGGTDNHLLLIDCRSFGMTGKEAENVLSEVNITTNKNTIPNDPETPFVTSGIRIGTPAITTRGLKEAEATKVAEFMIDALK 389          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_DECAR (Serine hydroxymethyltransferase OS=Dechloromonas aromatica (strain RCB) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.975e-43
Identity = 91/197 (46.19%), Postives = 124/197 (62.94%), Query Frame = 2
Query:   11 DMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTL-LEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAY 595
            DMAH +GL+AAG  P+P  +ADVVT+TTHK+LRGPRG +I  +               ++E+ +N A+FPGLQGGP  H I   AVA K+A TPE+K YQEQV++N    A+ L  E G  +VSG TE+H+ L++L+ K I G   E  L   HI  NKN +P D     V  GIR+G+PA+T+ GF E +  ++A+
Sbjct:  200 DMAHYAGLIAAGFYPNPVPFADVVTSTTHKTLRGPRGGVILMKA--------------EHEKALNSAIFPGLQGGPLEHVIAAKAVAFKEAATPEFKNYQEQVINNARVMARVLGEERGLRIVSGRTESHVFLLDLRAKNITGKDAEAALGRAHITVNKNGIPNDPQKPFVTSGIRIGSPAMTTRGFTEIEAEQIAH 382          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_CAUSK (Serine hydroxymethyltransferase OS=Caulobacter sp. (strain K31) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.975e-43
Identity = 93/205 (45.37%), Postives = 120/205 (58.54%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAM-VPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAV 613
            ++ DMAH +GLVA GV PSP  +A VVTTTTHK+LRGPRG M+                     +K+N AVFPGLQGGP  H I   AVA  +A  P +KAY + V+ N    A+ L   G  +VSGGT++HL+LV+L+ KG+ G   E  LE  H+  NKN VP D ++  V  GIR+GTPA T+ GF   +F +V       V
Sbjct:  210 LMVDMAHFAGLVAGGVFPSPIPHAHVVTTTTHKTLRGPRGGMVLTNDEA-------------IIKKVNSAVFPGLQGGPLEHVIAAKAVAFGEALQPAFKAYAQAVIDNARALAEALQTQGVNIVSGGTDSHLMLVDLRPKGVTGRDAEHSLERAHMTCNKNGVPFDTASFAVTSGIRLGTPAGTTRGFGAAEFTRVGQLIGEVV 401          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_WIGBR (Serine hydroxymethyltransferase OS=Wigglesworthia glossinidia brevipalpis GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.303e-42
Identity = 87/198 (43.94%), Postives = 127/198 (64.14%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            + AD++H++GL+ AG+ P+   YA VVTTTTHK+L GPRG +I        + K+G + FY   +K++ AVFPG QGGP  H I   AVA K+A T ++K YQ Q++ N     +  L+  + +VSGGT+NHL ++NL N G+ G    ++LE  +I  NKN++P D ++  +  GIR+GTPA+T  GF E +  KVA
Sbjct:  197 LFADISHVAGLIVAGIYPNAIPYAHVVTTTTHKTLSGPRGGLI--------LAKEGDDEFY---KKLDSAVFPGTQGGPLMHIIAAKAVAFKEAMTLKFKKYQHQLVKNSKSMVEIFLKRKFHVVSGGTKNHLFILNLSNIGLKGDLASEILEKANITVNKNSIPNDKLNPKITSGIRIGTPAITKRGFKEIESKKVA 383          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_SYNAS (Serine hydroxymethyltransferase OS=Syntrophus aciditrophicus (strain SB) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.303e-42
Identity = 88/198 (44.44%), Postives = 125/198 (63.13%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            ++AD+AHI+GLVA G+ PSP    + VT+TTHK+LRGPRG ++  +                Y++ ++  VFPG+QGGP  H I   AVA K+A T E+K YQ Q++ N    A+ L+  GY LVSGGT+NHL+L++L +KG+ G   ++ L++  I  NKN +P D    MV  GIR+GTPALTS G  E++   +A
Sbjct:  194 VMADIAHIAGLVATGLHPSPVPVCEYVTSTTHKTLRGPRGGLVMCQAS--------------YQKTLSSRVFPGVQGGPLMHIIAAKAVAFKEALTDEFKDYQSQIVKNAQALAKELIGRGYRLVSGGTDNHLLLMDLTDKGLTGKEAQESLDSAGITVNKNGIPFDTRGPMVTSGIRIGTPALTSRGMKEEEMRTIA 377          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_RICRS (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Sheila Smith) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.303e-42
Identity = 94/198 (47.47%), Postives = 121/198 (61.11%), Query Frame = 2
Query:    5 LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAY 595
            +AD+AHI+GLVA G   SP  YA  VT+TTHK+LRGPRG +I      +EI             KIN A+FPGLQGGP  H I   AVA  +   PEYK+Y +QV+SN    A +L E GY++++GGT+NH+VLV+L+  GI G      L+   I  NKN +P D  S  +  GIR+GTPA T+ GF E DF  V +
Sbjct:  199 MADIAHIAGLVATGEHQSPIPYAHAVTSTTHKTLRGPRGGLILSND--EEIG-----------HKINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH 383          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_RICRO (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Iowa) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.303e-42
Identity = 94/198 (47.47%), Postives = 121/198 (61.11%), Query Frame = 2
Query:    5 LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAY 595
            +AD+AHI+GLVA G   SP  YA  VT+TTHK+LRGPRG +I      +EI             KIN A+FPGLQGGP  H I   AVA  +   PEYK+Y +QV+SN    A +L E GY++++GGT+NH+VLV+L+  GI G      L+   I  NKN +P D  S  +  GIR+GTPA T+ GF E DF  V +
Sbjct:  199 MADIAHIAGLVATGEHQSPIPYAHAVTSTTHKTLRGPRGGLILSND--EEIG-----------HKINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH 383          
The following BLAST results are available for this feature:
BLAST of EY665040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_THEAB9.975e-4341.67Serine hydroxymethyltransferase OS=Thermosipho afr... [more]
GLYA_PROM99.975e-4345.69Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_METAC9.975e-4344.71Serine hydroxymethyltransferase OS=Methanosarcina ... [more]
GLYA_FINM29.975e-4344.17Serine hydroxymethyltransferase OS=Finegoldia magn... [more]
GLYA_DECAR9.975e-4346.19Serine hydroxymethyltransferase OS=Dechloromonas a... [more]
GLYA_CAUSK9.975e-4345.37Serine hydroxymethyltransferase OS=Caulobacter sp.... [more]
GLYA_WIGBR1.303e-4243.94Serine hydroxymethyltransferase OS=Wigglesworthia ... [more]
GLYA_SYNAS1.303e-4244.44Serine hydroxymethyltransferase OS=Syntrophus acid... [more]
GLYA_RICRS1.303e-4247.47Serine hydroxymethyltransferase OS=Rickettsia rick... [more]
GLYA_RICRO1.303e-4247.47Serine hydroxymethyltransferase OS=Rickettsia rick... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665040 ID=EY665040; Name=EY665040; organism=Citrus sinensis; type=EST; length=922bp
AATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCA
TCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAA
TCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAA
AGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAA
TAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACA
ATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAA
AGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCAAAATTTGCACAGACTC
TGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTA
GTGTTGGTGAATTTGAAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAA
AGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGG
ATGTGTCGGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTT
ACTTCTANGGGATTTGTTGAGGATGATTTTGCCAAGGTAGCATATTTCTT
TGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGNAACTCAAGGAA
ACAAGTTGAAAGATTTCGTGGGCCACACACAGTCCGCTAACTTNCAATNC
GAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCATTNCCC
CACATTGGGGTTGAAAAGGGATACATGAAAGTCCAGAACTGAAAGAAAAC
GCCACTGTACTANAGTAGCGGGAGCCAGCCTGTATGAGCTTTTATTACAC
AGAGCNACGAGGGATGAAATGTNACTACGATGATGAGCCATGGATCACTA
TTGACCCTGGGATTTGCGGCTT
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