EY665040

Overview
NameEY665040
Unique NameEY665040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_PSEHT (Serine hydroxymethyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.303e-42
Identity = 94/195 (48.21%), Postives = 121/195 (62.05%), Query Frame = 2
Query:   11 DMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            DMAH++GL+AAG+ PSP  +A VVTTTTHK+L GPRG +I        I+  G E  Y   +K+N AVFPG QGGP  H I   AVA K+A  PE+K YQ QV+ N       + E GY++VS  TENHL L++L NK I G   +  L   HI  NKN+VP D  S  V  G+R+G+PA+T  GF E +  ++A
Sbjct:  201 DMAHVAGLIAAGIYPSPVPHAHVVTTTTHKTLAGPRGGLI--------ISACGDEAIY---KKLNSAVFPGGQGGPLCHVIAAKAVAFKEALQPEFKVYQTQVVKNAQAMVAVMQERGYKIVSDKTENHLFLLDLINKDITGKDADAALGNAHITVNKNSVPNDPRSPFVTSGLRIGSPAITRRGFKEAESKELA 384          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_MAGSA (Serine hydroxymethyltransferase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.303e-42
Identity = 91/196 (46.43%), Postives = 120/196 (61.22%), Query Frame = 2
Query:    5 LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKV 589
            + DMAH +GLVA GV P+P  +A VVTTTTHK+LRGPRG MI                  D  +KIN A+FPG+QGGP  H I G AVA  +A  PE+K Y +QV+ N    A TL+  G ++VSGGT++HL+LV+L+ K + G   E  LE   +  NKN +P D     +  G+R+GTPA T+ GF  ++F KV
Sbjct:  205 MVDMAHFAGLVAGGVYPNPLPHAHVVTTTTHKTLRGPRGGMILSNDA-------------DIGKKINSAIFPGIQGGPLMHVIAGKAVAFGEALKPEFKLYAKQVVDNARALADTLVRRGLDIVSGGTDSHLMLVDLRPKKLTGKAAEASLEHAGMTCNKNGIPFDPEKPTITSGVRLGTPAATTRGFGVEEFKKV 387          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_BRUSI (Serine hydroxymethyltransferase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.303e-42
Identity = 98/218 (44.95%), Postives = 126/218 (57.80%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGN 652
            ++ DMAHI+GLVA G  PSP  +A V TTTTHKSLRGPRG MI                  D  +KIN AVFPGLQGGP  H I G AVA  +A  PE+K Y + V+ N    A+ L   G ++VSGGT+NHL+LV+L+ K   G R E  L   +I  NKN +P D     V  G+R+GTPA T+ GF   +F ++     A V   +K+ +  +GN
Sbjct:  210 LMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSLRGPRGGMILTNDA-------------DIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKPEFKLYAKNVVDNARALAEELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFGVAEFKEIGSLI-AEVLDGLKVANSDEGN 413          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_BRUO2 (Serine hydroxymethyltransferase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.303e-42
Identity = 98/218 (44.95%), Postives = 126/218 (57.80%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGN 652
            ++ DMAHI+GLVA G  PSP  +A V TTTTHKSLRGPRG MI                  D  +KIN AVFPGLQGGP  H I G AVA  +A  PE+K Y + V+ N    A+ L   G ++VSGGT+NHL+LV+L+ K   G R E  L   +I  NKN +P D     V  G+R+GTPA T+ GF   +F ++     A V   +K+ +  +GN
Sbjct:  210 LMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSLRGPRGGMILTNDA-------------DIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKPEFKLYAKNVVDNARALAEELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFGVAEFKEIGSLI-AEVLDGLKVANSDEGN 413          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_BRUME (Serine hydroxymethyltransferase OS=Brucella melitensis GN=glyA PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.303e-42
Identity = 98/218 (44.95%), Postives = 126/218 (57.80%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGN 652
            ++ DMAHI+GLVA G  PSP  +A V TTTTHKSLRGPRG MI                  D  +KIN AVFPGLQGGP  H I G AVA  +A  PE+K Y + V+ N    A+ L   G ++VSGGT+NHL+LV+L+ K   G R E  L   +I  NKN +P D     V  G+R+GTPA T+ GF   +F ++     A V   +K+ +  +GN
Sbjct:  210 LMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSLRGPRGGMILTNDA-------------DIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKPEFKLYAKNVVDNARALAEELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPFDPEKPFVASGVRLGTPAGTTRGFGVAEFKEIGSLI-AEVLDGLKVANSDEGN 413          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_BRUMB (Serine hydroxymethyltransferase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.303e-42
Identity = 98/218 (44.95%), Postives = 126/218 (57.80%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGN 652
            ++ DMAHI+GLVA G  PSP  +A V TTTTHKSLRGPRG MI                  D  +KIN AVFPGLQGGP  H I G AVA  +A  PE+K Y + V+ N    A+ L   G ++VSGGT+NHL+LV+L+ K   G R E  L   +I  NKN +P D     V  G+R+GTPA T+ GF   +F ++     A V   +K+ +  +GN
Sbjct:  210 LMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSLRGPRGGMILTNDA-------------DIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKPEFKLYAKNVVDNARALAEELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFGVAEFKEIGSLI-AEVLDGLKVANSDEGN 413          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_BRUAB (Serine hydroxymethyltransferase OS=Brucella abortus GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.303e-42
Identity = 98/218 (44.95%), Postives = 126/218 (57.80%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGN 652
            ++ DMAHI+GLVA G  PSP  +A V TTTTHKSLRGPRG MI                  D  +KIN AVFPGLQGGP  H I G AVA  +A  PE+K Y + V+ N    A+ L   G ++VSGGT+NHL+LV+L+ K   G R E  L   +I  NKN +P D     V  G+R+GTPA T+ GF   +F ++     A V   +K+ +  +GN
Sbjct:  210 LMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSLRGPRGGMILTNDA-------------DIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKPEFKLYAKNVVDNARALAEELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFGVAEFKEIGSLI-AEVLDGLKVANSDEGN 413          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_BRUA2 (Serine hydroxymethyltransferase OS=Brucella abortus (strain 2308) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.303e-42
Identity = 98/218 (44.95%), Postives = 126/218 (57.80%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGN 652
            ++ DMAHI+GLVA G  PSP  +A V TTTTHKSLRGPRG MI                  D  +KIN AVFPGLQGGP  H I G AVA  +A  PE+K Y + V+ N    A+ L   G ++VSGGT+NHL+LV+L+ K   G R E  L   +I  NKN +P D     V  G+R+GTPA T+ GF   +F ++     A V   +K+ +  +GN
Sbjct:  210 LMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSLRGPRGGMILTNDA-------------DIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKPEFKLYAKNVVDNARALAEELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFGVAEFKEIGSLI-AEVLDGLKVANSDEGN 413          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_BRUA1 (Serine hydroxymethyltransferase OS=Brucella abortus (strain S19) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.303e-42
Identity = 98/218 (44.95%), Postives = 126/218 (57.80%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGN 652
            ++ DMAHI+GLVA G  PSP  +A V TTTTHKSLRGPRG MI                  D  +KIN AVFPGLQGGP  H I G AVA  +A  PE+K Y + V+ N    A+ L   G ++VSGGT+NHL+LV+L+ K   G R E  L   +I  NKN +P D     V  G+R+GTPA T+ GF   +F ++     A V   +K+ +  +GN
Sbjct:  210 LMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSLRGPRGGMILTNDA-------------DIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKPEFKLYAKNVVDNARALAEELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFGVAEFKEIGSLI-AEVLDGLKVANSDEGN 413          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA1_ERWCT (Serine hydroxymethyltransferase 1 OS=Erwinia carotovora subsp. atroseptica GN=glyA1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.303e-42
Identity = 90/198 (45.45%), Postives = 121/198 (61.11%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            +  DMAH++GL+AA V P+P  +A +VTTTTHK+L GPRG +I  + G +++ K           K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  L  G+ +VSG T NHL L++L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA T  GF E +  ++A
Sbjct:  197 LFVDMAHVAGLIAADVYPNPVPHAHIVTTTTHKTLAGPRGGLILAKGGDEDLYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLSRGFNVVSGATSNHLFLLDLVSKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGTPAATRRGFKEAEVRELA 383          
The following BLAST results are available for this feature:
BLAST of EY665040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PSEHT1.303e-4248.21Serine hydroxymethyltransferase OS=Pseudoalteromon... [more]
GLYA_MAGSA1.303e-4246.43Serine hydroxymethyltransferase OS=Magnetospirillu... [more]
GLYA_BRUSI1.303e-4244.95Serine hydroxymethyltransferase OS=Brucella suis (... [more]
GLYA_BRUO21.303e-4244.95Serine hydroxymethyltransferase OS=Brucella ovis (... [more]
GLYA_BRUME1.303e-4244.95Serine hydroxymethyltransferase OS=Brucella melite... [more]
GLYA_BRUMB1.303e-4244.95Serine hydroxymethyltransferase OS=Brucella melite... [more]
GLYA_BRUAB1.303e-4244.95Serine hydroxymethyltransferase OS=Brucella abortu... [more]
GLYA_BRUA21.303e-4244.95Serine hydroxymethyltransferase OS=Brucella abortu... [more]
GLYA_BRUA11.303e-4244.95Serine hydroxymethyltransferase OS=Brucella abortu... [more]
GLYA1_ERWCT1.303e-4245.45Serine hydroxymethyltransferase 1 OS=Erwinia carot... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665040 ID=EY665040; Name=EY665040; organism=Citrus sinensis; type=EST; length=922bp
AATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCA
TCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAA
TCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAA
AGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAA
TAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACA
ATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAA
AGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCAAAATTTGCACAGACTC
TGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTA
GTGTTGGTGAATTTGAAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAA
AGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGG
ATGTGTCGGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTT
ACTTCTANGGGATTTGTTGAGGATGATTTTGCCAAGGTAGCATATTTCTT
TGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGNAACTCAAGGAA
ACAAGTTGAAAGATTTCGTGGGCCACACACAGTCCGCTAACTTNCAATNC
GAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCATTNCCC
CACATTGGGGTTGAAAAGGGATACATGAAAGTCCAGAACTGAAAGAAAAC
GCCACTGTACTANAGTAGCGGGAGCCAGCCTGTATGAGCTTTTATTACAC
AGAGCNACGAGGGATGAAATGTNACTACGATGATGAGCCATGGATCACTA
TTGACCCTGGGATTTGCGGCTT
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