EY665040

Overview
NameEY665040
Unique NameEY665040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_THEYD (Serine hydroxymethyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.702e-42
Identity = 86/206 (41.75%), Postives = 128/206 (62.14%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVK 616
            ++AD+AHI+GL+A  + PSP  Y+D +TTTTHK+LRGPRG ++  +                Y + I++ VFPG+QGGP  H I   AVA K+A + ++K YQ++V+ N    A+ L + G++LVS GT+NHL+LV+L N  I G   E+ L+   I  NKNT+P D     V  GIR+GTP++T+ G  E++  K+A   +  +K
Sbjct:  196 LMADIAHIAGLIATSMHPSPVPYSDFITTTTHKTLRGPRGGVVMCKA--------------QYAKAIDKTVFPGIQGGPLVHVIAAKAVAFKEALSEDFKEYQKKVIKNAKTLAEALKKKGFKLVSDGTDNHLMLVDLTNFNITGKEAEEALDKAGITVNKNTIPFDTKPPTVTSGIRIGTPSVTTRGMGEEEMEKIAEIIERVIK 387          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_SHEPW (Serine hydroxymethyltransferase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.702e-42
Identity = 91/193 (47.15%), Postives = 123/193 (63.73%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDD 577
            +  DMAH++GLVAAG+ P+P  +A VVTTTTHK+L GPRG +I        ++    E  Y   +K+N AVFPG QGGP  H I   AVA K+A  PE+  YQEQV+ N    A+T +E GY++VSGGT+NHL L++L +K + G   +  L   +I  NKN+VP D  S  V  G+R+G+PA+T  GF E +
Sbjct:  198 LFVDMAHVAGLVAAGIYPNPLPHAHVVTTTTHKTLAGPRGGLI--------LSAIDDEAIY---KKLNSAVFPGGQGGPLMHVIAAKAVAFKEALDPEFTTYQEQVVVNAKAMARTFIERGYDVVSGGTDNHLFLLDLISKDMTGKDADAALGNANITVNKNSVPNDPRSPFVTSGLRIGSPAITRRGFGEQE 379          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_RICTY (Serine hydroxymethyltransferase OS=Rickettsia typhi GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.702e-42
Identity = 96/202 (47.52%), Postives = 121/202 (59.90%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEE---KINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAY 595
            ++AD+AHI+GLVA G   SP  YA VVT+TTHK+LRGPRG +I                  DYEE   KIN A+FPGLQGGP  H I   AVA  +   PEYK Y +QV+SN    A +L E GY++++GGT+NH+VLV+L+  GI G      L+   I  NKN +P D  S  V  GIR GT A T+ GF E DF  + +
Sbjct:  198 LMADIAHIAGLVATGEHQSPIPYAHVVTSTTHKTLRGPRGGLILS----------------DYEEIGKKINSALFPGLQGGPLMHVIAAKAVAFLENLQPEYKCYIKQVISNAKALAISLQERGYDILTGGTDNHIVLVDLRKDGITGKCAANSLDRAGITCNKNAIPFDTTSPFVTSGIRFGTSACTTKGFKEKDFVLIGH 383          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_RICPR (Serine hydroxymethyltransferase OS=Rickettsia prowazekii GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.702e-42
Identity = 95/199 (47.74%), Postives = 122/199 (61.31%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAY 595
            ++AD+AHI+GLVA G   SP  YA VVT+TTHK+LRGPRG +I      +EI K           KIN A+FPGLQGGP  H I   AVA  +   PEYK Y +QV+SN    A +L E GY++++GGT+NH+VLV+L+  GI G      L+   I  NKN +P D  S  +  GIR GTPA T+ GF E DF  + +
Sbjct:  198 LMADIAHIAGLVATGEHQSPIPYAHVVTSTTHKTLRGPRGGLIL--SDDEEIGK-----------KINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKNYIKQVISNAKALAISLQERGYDILTGGTDNHIVLVDLRKDGITGKCAANSLDRAGITCNKNAIPFDTTSPFITSGIRFGTPACTTKGFKEKDFVLIGH 383          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_PSYIN (Serine hydroxymethyltransferase OS=Psychromonas ingrahamii (strain 37) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.702e-42
Identity = 93/198 (46.97%), Postives = 121/198 (61.11%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            +  DMAH++GLVAAG+ P+P  +ADVVTTTTHK+L GPRG +I        + K  + +    E+K+N AVFPG QGGP  H I   AVA K+   PE+  YQ+QVL N     ++ L  GY++VSGGTENHL LV+L  + I G   +  L   HI  NKN+VP D  S  V  G+R+GTPAL   G      A++A
Sbjct:  198 LFVDMAHVAGLVAAGLYPNPVPFADVVTTTTHKTLGGPRGGLI--------LAKANEAI----EKKLNSAVFPGQQGGPLMHVIAAKAVAFKECAEPEFAVYQQQVLDNAKAMVKSFLARGYKIVSGGTENHLFLVDLIAQDITGKEADAALGNAHITVNKNSVPNDPRSPFVTSGLRIGTPALARRGVNAQQSAELA 383          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_PROM1 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain NATL1A) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.702e-42
Identity = 92/197 (46.70%), Postives = 130/197 (65.99%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKV 589
            +LAD+AHI+GLVA+G+ PSP  Y DVVTTTTHK+LRGPRG +I  +   +EI K           K+++AVFPG QGGP  H I   AVA ++A+ PE+K Y ++V+SN    +  L + G  +VS GT+NH+VL++L++ G+ G   ++++  + I ANKNTVP D  S  V  G+R+G+ ALT+ GF E  F  V
Sbjct:  190 LLADIAHIAGLVASGLHPSPIPYCDVVTTTTHKTLRGPRGGLILSKD--EEIGK-----------KLDKAVFPGTQGGPLEHVIAAKAVAFQEASAPEFKIYSQKVISNAQVLSNQLQKRGISIVSKGTDNHIVLLDLRSIGMTGKVADQLVSDIKITANKNTVPFDPESPFVTSGLRLGSAALTTRGFNEQAFEDV 373          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_ORITI (Serine hydroxymethyltransferase OS=Orientia tsutsugamushi (strain Ikeda) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.702e-42
Identity = 102/238 (42.86%), Postives = 137/238 (57.56%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA-YFFDAAVKLAVKIKSXTQG---------NKLKDFVGHTQ 682
            +LAD+AHI+GLVA     SP  YA VVT+TTHK+LRGPRG +I      + I+K           KIN AVFPG+QGGP  H I   A+A  +A  P+YK Y  QV+ N    A+ L + GY +++GGT+NH++LV+L+ K I G   E +L+A  I  NK  +P D  S  +  GIR+GTPA T+ GF E+DF  V  Y  D    +A+ IKS  +          N L   + HT+
Sbjct:  188 LLADIAHIAGLVATEYHSSPIPYAHVVTSTTHKTLRGPRGGLILTND--ESISK-----------KINSAVFPGMQGGPLMHVIAAKAIAFSEALMPQYKEYINQVMLNAKVLAKLLQDRGYNILTGGTDNHMLLVDLRGKNITGQEAEYLLDAAGITCNKQVMPFDTTSPTITSGIRLGTPACTTRGFKENDFITVGKYIADILDNIAI-IKSAKKNEDITITEIENSLDSVITHTK 411          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_MYCH7 (Serine hydroxymethyltransferase OS=Mycoplasma hyopneumoniae (strain 7448) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.702e-42
Identity = 91/207 (43.96%), Postives = 133/207 (64.25%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVN-LKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVK 616
            +LAD+AHI+GL+AAG  PSP  YA ++T+TT K+LRGPRG +I             KE+      KI++ VFPG+QGGP  HTI   AVA K+A  P +K Y  Q++ N + FA   ++ G  +VS GTENHL  ++ L +  ++G + + +LE+V+I  NKNT+P D +S  V  G+R+GTPA+TS GF E +F+++A   D  ++
Sbjct:  194 LLADIAHIAGLIAAGQHPSPVGYAHIITSTTQKTLRGPRGGLIL---------TSSKEI----AAKIDKVVFPGIQGGPFFHTIAAKAVAFKEALEPWFKEYCAQIVKNAAHFASEFIKKGIRIVSQGTENHLFTIDVLSSYNLNGKQAQILLESVNIITNKNTIPNDTLSPFVTSGLRLGTPAMTSRGFKEQEFSQMAEIIDFVLR 387          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_METPB (Serine hydroxymethyltransferase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.702e-42
Identity = 92/194 (47.42%), Postives = 116/194 (59.79%), Query Frame = 2
Query:   11 DMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKV 589
            DMAH +GLVAAG+ PSPF +A V TTTTHK+LRGPRG MI                     +K N A+FPGLQGGP  H I   AVA  +A  PE+K Y +QV+ N    A T++  GY++ SGGT+NHL+LV+L+ KG+ G   E  L    I  NKN VP D     +  GIR+GTPA T+ GF   +F +V
Sbjct:  213 DMAHFAGLVAAGLHPSPFPHAHVATTTTHKTLRGPRGGMILTNDEA-------------LAKKFNSAIFPGLQGGPLMHVIAAKAVAFGEALKPEFKIYAKQVIDNAKALADTIISGGYDITSGGTDNHLMLVDLQKKGLTGKAAEAALSRADITCNKNGVPFDPQKPTITSGIRLGTPASTTRGFGVAEFKQV 393          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_CAMHC (Serine hydroxymethyltransferase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.702e-42
Identity = 98/247 (39.68%), Postives = 138/247 (55.87%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGNKLKDFVGHTQSANXQXEIAKLRHDVEEYA 739
            + AD+AHI+GLV AG   +PF Y  VV++TTHK+LRGPRG +I   +              ++ +KIN ++FPG+QGGP  H I G AV  K   +PE+K Y +QV +NC     TL++ G++LVSGGT+NHL+LV+   K   G      LE   I  NKNTVPG+  S  V  GIR+G+ ALTS G  E +F  +A                   NK+ D +    + + Q   +K++ +V+E A
Sbjct:  193 LFADVAHIAGLVVAGEHTNPFPYCHVVSSTTHKTLRGPRGGIIMTNEE-------------EFAKKINSSIFPGMQGGPLVHVIAGKAVGFKHNLSPEWKTYAKQVKANCKILGDTLMKRGFDLVSGGTDNHLILVSFLKKDYSGKDASNALENAGITVNKNTVPGETRSPFVTSGIRVGSAALTSRGMKEKEFEWIA-------------------NKIADVLNDINNTSLQ---SKIKAEVKELA 404          
The following BLAST results are available for this feature:
BLAST of EY665040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_THEYD1.702e-4241.75Serine hydroxymethyltransferase OS=Thermodesulfovi... [more]
GLYA_SHEPW1.702e-4247.15Serine hydroxymethyltransferase OS=Shewanella piez... [more]
GLYA_RICTY1.702e-4247.52Serine hydroxymethyltransferase OS=Rickettsia typh... [more]
GLYA_RICPR1.702e-4247.74Serine hydroxymethyltransferase OS=Rickettsia prow... [more]
GLYA_PSYIN1.702e-4246.97Serine hydroxymethyltransferase OS=Psychromonas in... [more]
GLYA_PROM11.702e-4246.70Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_ORITI1.702e-4242.86Serine hydroxymethyltransferase OS=Orientia tsutsu... [more]
GLYA_MYCH71.702e-4243.96Serine hydroxymethyltransferase OS=Mycoplasma hyop... [more]
GLYA_METPB1.702e-4247.42Serine hydroxymethyltransferase OS=Methylobacteriu... [more]
GLYA_CAMHC1.702e-4239.68Serine hydroxymethyltransferase OS=Campylobacter h... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665040 ID=EY665040; Name=EY665040; organism=Citrus sinensis; type=EST; length=922bp
AATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCA
TCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAA
TCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAA
AGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAA
TAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACA
ATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAA
AGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCAAAATTTGCACAGACTC
TGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTA
GTGTTGGTGAATTTGAAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAA
AGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGG
ATGTGTCGGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTT
ACTTCTANGGGATTTGTTGAGGATGATTTTGCCAAGGTAGCATATTTCTT
TGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGNAACTCAAGGAA
ACAAGTTGAAAGATTTCGTGGGCCACACACAGTCCGCTAACTTNCAATNC
GAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCATTNCCC
CACATTGGGGTTGAAAAGGGATACATGAAAGTCCAGAACTGAAAGAAAAC
GCCACTGTACTANAGTAGCGGGAGCCAGCCTGTATGAGCTTTTATTACAC
AGAGCNACGAGGGATGAAATGTNACTACGATGATGAGCCATGGATCACTA
TTGACCCTGGGATTTGCGGCTT
back to top