EY665040

Overview
NameEY665040
Unique NameEY665040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_BRUC2 (Serine hydroxymethyltransferase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=glyA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.881e-41
Identity = 97/218 (44.50%), Postives = 125/218 (57.34%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGN 652
            ++ DMAHI+GLVA G  PSP  +A V TTTTHKSLRGPRG MI                  D  +KIN AVFPGLQGGP  H I G AVA  +A   E+K Y + V+ N    A+ L   G ++VSGGT+NHL+LV+L+ K   G R E  L   +I  NKN +P D     V  G+R+GTPA T+ GF   +F ++     A V   +K+ +  +GN
Sbjct:  210 LMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSLRGPRGGMILTNDA-------------DIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKLEFKLYAKNVVDNARALAEELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFGVAEFKEIGSLI-AEVLDGLKVANSDEGN 413          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_BORHD (Serine hydroxymethyltransferase OS=Borrelia hermsii (strain DAH) GN=glyA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.881e-41
Identity = 98/222 (44.14%), Postives = 134/222 (60.36%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF-RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGNKLK 661
            +L D+AH +GL+A G   SP + A + T+TTHK+LRGPRG +I   R+    +N   KE     E+ +N  VFPG QGGP  H I G AVA ++A   ++K Y  +V+SN    A+  +  G+ +VSGGT+NHL LV+L   GI G+  EKVLE V+I  NKN +P D  +  V  GIR+G  A+TS G   DD  +VA+F    V  A+K KS  +  K+K
Sbjct:  189 LLCDVAHTAGLIATGFHNSPIDVAHLTTSTTHKTLRGPRGGLILAGRESSIIVNYNNKE--RRLEDAVNSCVFPGTQGGPLMHVIAGKAVAFREALMEDFKDYISRVISNTKAMAECFISEGFRIVSGGTDNHLFLVDLGILGITGADAEKVLERVNITLNKNAIPFDSKNPSVTSGIRIGAAAITSRGLNRDDSIRVAHF----VIRALKTKSEDELKKIK 404          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_ANASK (Serine hydroxymethyltransferase OS=Anaeromyxobacter sp. (strain K) GN=glyA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.881e-41
Identity = 90/198 (45.45%), Postives = 120/198 (60.61%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            M+ DMAHI+GLVAAG+ PSP  ++++VTTTTHK+LRGPRG MI  R+               + + +N  +FPG+QGGP  H I   AVA  +A  PE+KAYQ +++ N    A+ L   G  LVSGGT+NHL+LV+L+ K + G   E+ L    I  NKN +P D    M   GIR+GTPALT+ G    +   VA
Sbjct:  197 MVVDMAHIAGLVAAGLHPSPVPHSEIVTTTTHKTLRGPRGGMILCREA--------------HAKTLNSQIFPGIQGGPLEHVIAAKAVAFGEALRPEFKAYQRRIVENAQVLAEGLKSAGLRLVSGGTDNHLMLVDLRPKKLTGKIAEEALGRAGITVNKNMIPWDPEKPMTTSGIRVGTPALTTRGMGSREMTLVA 380          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_ANAD2 (Serine hydroxymethyltransferase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glyA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.881e-41
Identity = 90/198 (45.45%), Postives = 120/198 (60.61%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            M+ DMAHI+GLVAAG+ PSP  ++++VTTTTHK+LRGPRG MI  R+               + + +N  +FPG+QGGP  H I   AVA  +A  PE+KAYQ +++ N    A+ L   G  LVSGGT+NHL+LV+L+ K + G   E+ L    I  NKN +P D    M   GIR+GTPALT+ G    +   VA
Sbjct:  197 MVVDMAHIAGLVAAGLHPSPVPHSEIVTTTTHKTLRGPRGGMILCREA--------------HAKTLNSQIFPGIQGGPLEHVIAAKAVAFGEALRPEFKAYQRRIVENAQVLAEGLKSAGLRLVSGGTDNHLMLVDLRPKKLTGKIAEEALGKAGITVNKNMIPWDPEKPMTTSGIRVGTPALTTRGMGSREMTLVA 380          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA4_COLP3 (Serine hydroxymethyltransferase 4 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=glyA4 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.881e-41
Identity = 91/189 (48.15%), Postives = 119/189 (62.96%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGF 565
            +  DMAH++GLVAAG+ P+P   ADVVTTTTHK+LRGPRG +I        + KQ  E+     +K+N AVFP  QGGP  H I   A+  K+A    Y  YQ+QV+ N  + A+T    GY +VSGGT+NHL L++L +KGI G   +  L   +I  NKN+VP D  S  V  G+R+GTPA+TS GF
Sbjct:  198 LFVDMAHVAGLVAAGLYPNPVPIADVVTTTTHKTLRGPRGGLI--------LAKQNDEL----AKKLNSAVFPAGQGGPLMHVIAAKAICFKEALGEGYVEYQQQVIDNAREMAKTFQTRGYNVVSGGTDNHLFLLDLIDKGITGKDADAALGRANITVNKNSVPNDPQSPFVTSGLRIGTPAITSRGF 374          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA2_RALSO (Serine hydroxymethyltransferase 2 OS=Ralstonia solanacearum GN=glyA2 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.881e-41
Identity = 91/197 (46.19%), Postives = 125/197 (63.45%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKV 589
            ++ DMAHI+G++AAG   +P ++A VVT+TTHK+LRGPRG  +      +EI K           KIN AVFPGLQGGP  H I G AVA  +A  PE+K Y + VL+N     + L   G +LV+GGT+NHL+LV+L+ KG+ G++VE+ LE   I  NKN +P D     +  GIR+GTPA T+ GF   +F ++
Sbjct:  202 LMVDMAHIAGVIAAGRHDNPVDHAHVVTSTTHKTLRGPRGGFVLTND--EEIAK-----------KINSAVFPGLQGGPLMHVIAGKAVAFGEALKPEFKTYIDSVLANAKALGEVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGTQVEQALERAGITCNKNGIPFDTEKPTITSGIRLGTPAATTRGFGVAEFEQI 385          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA2_ERWCT (Serine hydroxymethyltransferase 2 OS=Erwinia carotovora subsp. atroseptica GN=glyA2 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.881e-41
Identity = 89/186 (47.85%), Postives = 119/186 (63.98%), Query Frame = 2
Query:   11 DMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGF 565
            DMAH++GLVAAG  P+P   A VVT+TTHK+LRGPRG +I   KG  E          D+ +K+N AVFPG+QGGP  H I   AVA K+A  PE+  YQ QV++N    A+ + + GY++VS GT+NHL+L++L  K   G   +  L   +I  NKN+VP D  S  V  G+R+GTPA+T+ GF
Sbjct:  201 DMAHVAGLVAAGEYPNPLPQAHVVTSTTHKTLRGPRGGIIL-AKGQSE----------DFYKKLNAAVFPGIQGGPLMHVIAAKAVAFKEALRPEFTVYQRQVVANARAMARIIQQRGYKIVSDGTDNHLLLIDLSAKPYTGKDADAALSDAYITTNKNSVPNDPRSPFVTSGLRIGTPAVTTRGF 375          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA2_COLP3 (Serine hydroxymethyltransferase 2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.881e-41
Identity = 91/189 (48.15%), Postives = 119/189 (62.96%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGF 565
            +  DMAH++GLVAAG+ P+P   ADVVTTTTHK+LRGPRG +I        + KQ  E+     +K+N AVFP  QGGP  H I   A+  K+A    Y  YQ+QV+ N  + A+T    GY +VSGGT+NHL L++L +KGI G   +  L   +I  NKN+VP D  S  V  G+R+GTPA+TS GF
Sbjct:  198 LFVDMAHVAGLVAAGLYPNPVPIADVVTTTTHKTLRGPRGGLI--------LAKQNDEL----AKKLNSAVFPAGQGGPLMHVIAAKAICFKEALGEGYVEYQQQVIDNAREMAKTFQTRGYNVVSGGTDNHLFLLDLIDKGITGKDADAALGRANITVNKNSVPNDPQSPFVTSGLRIGTPAITSRGF 374          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_RHOCS (Serine hydroxymethyltransferase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=glyA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.457e-41
Identity = 94/197 (47.72%), Postives = 121/197 (61.42%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKV 589
            ++ DMAH +GLVAAGV PSP  +A VVTTTTHK+LRGPRG MI       E+ K           K N AVFPGLQGGP  H I   AVA  +A  PE+KAY + V+ N    A  L+  G ++VSGGT++H+VLV+L+ K + G   E  LE   +  NKN VP D    +V  G+R+G+PA T+ GF   +FA+V
Sbjct:  204 LMVDMAHYAGLVAAGVYPSPLPHAHVVTTTTHKTLRGPRGGMILSND--PELGK-----------KFNSAVFPGLQGGPLMHVIAAKAVAFGEALRPEFKAYAQAVVDNARVLADRLVAGGLDIVSGGTDSHIVLVDLRPKRLTGKAAEATLEHAGMTCNKNGVPFDPEKPLVTSGVRLGSPAATTRGFGTAEFAQV 387          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_PROMS (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain AS9601) GN=glyA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.457e-41
Identity = 87/197 (44.16%), Postives = 128/197 (64.97%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKV 589
            ++AD+AHI+GLVA+ + P+P  + DVVTTTTHK+LRGPRG +I  +               ++ +K +++VFPG QGGP  H I   AVA ++A  P++  Y +QV+ N    A TL+  G  +VSGGT+NH+VL++L++  + G   + ++  V+I ANKNTVP D  S  V  G+R+GT ALT+ GF E+ FA+V
Sbjct:  197 LMADIAHIAGLVASKLHPNPIPHCDVVTTTTHKTLRGPRGGLILCKDA-------------EFGKKFDKSVFPGTQGGPLEHIIAAKAVAFREALQPDFVNYSQQVIKNAKVLASTLINRGINIVSGGTDNHIVLLDLRSINMTGKIADLLVSEVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFNENAFAEV 380          
The following BLAST results are available for this feature:
BLAST of EY665040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_BRUC21.881e-4144.50Serine hydroxymethyltransferase OS=Brucella canis ... [more]
GLYA_BORHD1.881e-4144.14Serine hydroxymethyltransferase OS=Borrelia hermsi... [more]
GLYA_ANASK1.881e-4145.45Serine hydroxymethyltransferase OS=Anaeromyxobacte... [more]
GLYA_ANAD21.881e-4145.45Serine hydroxymethyltransferase OS=Anaeromyxobacte... [more]
GLYA4_COLP31.881e-4148.15Serine hydroxymethyltransferase 4 OS=Colwellia psy... [more]
GLYA2_RALSO1.881e-4146.19Serine hydroxymethyltransferase 2 OS=Ralstonia sol... [more]
GLYA2_ERWCT1.881e-4147.85Serine hydroxymethyltransferase 2 OS=Erwinia carot... [more]
GLYA2_COLP31.881e-4148.15Serine hydroxymethyltransferase 2 OS=Colwellia psy... [more]
GLYA_RHOCS2.457e-4147.72Serine hydroxymethyltransferase OS=Rhodospirillum ... [more]
GLYA_PROMS2.457e-4144.16Serine hydroxymethyltransferase OS=Prochlorococcus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665040 ID=EY665040; Name=EY665040; organism=Citrus sinensis; type=EST; length=922bp
AATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCA
TCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAA
TCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAA
AGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAA
TAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACA
ATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAA
AGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCAAAATTTGCACAGACTC
TGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTA
GTGTTGGTGAATTTGAAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAA
AGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGG
ATGTGTCGGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTT
ACTTCTANGGGATTTGTTGAGGATGATTTTGCCAAGGTAGCATATTTCTT
TGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGNAACTCAAGGAA
ACAAGTTGAAAGATTTCGTGGGCCACACACAGTCCGCTAACTTNCAATNC
GAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCATTNCCC
CACATTGGGGTTGAAAAGGGATACATGAAAGTCCAGAACTGAAAGAAAAC
GCCACTGTACTANAGTAGCGGGAGCCAGCCTGTATGAGCTTTTATTACAC
AGAGCNACGAGGGATGAAATGTNACTACGATGATGAGCCATGGATCACTA
TTGACCCTGGGATTTGCGGCTT
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