EY665040

Overview
NameEY665040
Unique NameEY665040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBK (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=glyA PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.623e-48
Identity = 94/206 (45.63%), Postives = 134/206 (65.05%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVK 616
            M+ DMAHI+GLVA G+ PSP  YAD VTTTTHK+LRGPRG  I  ++               Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+ GF E++  K+AYF + +++
Sbjct:  196 MMVDMAHIAGLVATGIHPSPVPYADFVTTTTHKTLRGPRGGAILCKE--------------KYAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA1_RALEJ (Serine hydroxymethyltransferase 1 OS=Ralstonia eutropha (strain JMP134) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.623e-48
Identity = 105/253 (41.50%), Postives = 144/253 (56.92%), Query Frame = 2
Query:    5 LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGNKLKDFVGHTQSANXQXEIAKLRHDVEEYAKHXPTLG 760
            + DMAH +GL+AAGV P+P  +AD VTTTTHKSLRGPRG +I  +               ++E+ IN ++FPG+QGGP  H I G AVA K+A TPE+KAYQEQV+ N +  A+TL+  G  +VSG TE+H++LV+L+ K I G   E++L   H+  NKN +P D     V  GIR+G+PA+T+ GF E++   V                   GN + D + +   A     IA +R  V    K  P  G
Sbjct:  199 MVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVILMKA--------------EHEKAINSSIFPGIQGGPLMHVIAGKAVAFKEALTPEFKAYQEQVVKNAAVLAETLIARGLRIVSGRTESHVMLVDLRAKNITGKEAERILGEAHLTVNKNAIPNDPEKPFVTSGIRVGSPAMTTRGFKEEEARIV-------------------GNLIADVLDNPHDAG---NIASVREQVSALTKRFPVYG 415          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_LEGPL (Serine hydroxymethyltransferase OS=Legionella pneumophila (strain Lens) GN=glyA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.886e-48
Identity = 98/191 (51.31%), Postives = 128/191 (67.02%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVE 571
            ++AD+AH++GLVA G+ PSP  YADVVTTTTHK+LRGPRG +I        + K+ +E+    E+K+N AVFPG+QGGP  H I   AVA  +A  PE+K YQ+QVL+N       L   GY++VSGGT+NHL+LV+L NKGI G   +  L   +I  NKN+VP D  S  V  G+R+GTPA T+ GF E
Sbjct:  198 LMADIAHVAGLVAVGLYPSPVPYADVVTTTTHKTLRGPRGGLI--------LCKENEEI----EKKLNSAVFPGMQGGPLMHVIAAKAVAFAEALLPEFKTYQQQVLANARTMCSVLQSRGYDIVSGGTDNHLLLVDLINKGITGKEADAALGRANITVNKNSVPNDPRSPFVTSGLRLGTPAATTRGFKE 376          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.886e-48
Identity = 98/198 (49.49%), Postives = 128/198 (64.65%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            ++ DMAHI+GLVAAG+ PSP  YA V TTTTHK+LRGPRG MI   + +++            +   N+A+FPG+QGGP  H I   AV  K+A  PE+K YQ+Q++ N     + L   G ++VS GT+NHL+LV+L   G+ G  +EK+L+A HI ANKNT+P D     V  GIR+GTPA TS G  EDDF KVA
Sbjct:  196 LMVDMAHIAGLVAAGLHPSPIPYAHVTTTTTHKTLRGPRGGMILCSQEMQD------------KYNFNKAIFPGIQGGPLMHVIAAKAVCFKEALQPEFKEYQKQIVKNAQALCKGLQSRGIKIVSDGTDNHLMLVDLTPFGLTGKSIEKLLDAAHITANKNTIPNDPQKPFVTSGIRLGTPAATSRGLKEDDFDKVA 381          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBM (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=glyA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.886e-48
Identity = 94/206 (45.63%), Postives = 134/206 (65.05%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVK 616
            M+ DMAHI+GLVA G+ PSP  YAD VTTTTHK+LRGPRG  I  ++               Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+ GF E++  K+AYF + +++
Sbjct:  196 MMVDMAHIAGLVATGLHPSPVPYADFVTTTTHKTLRGPRGGAILCKE--------------KYAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBJ (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=glyA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.886e-48
Identity = 94/206 (45.63%), Postives = 134/206 (65.05%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVK 616
            M+ DMAHI+GLVA G+ PSP  YAD VTTTTHK+LRGPRG  I  ++               Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+ GF E++  K+AYF + +++
Sbjct:  196 MMVDMAHIAGLVATGLHPSPVPYADFVTTTTHKTLRGPRGGAILCKE--------------KYAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBH (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.886e-48
Identity = 94/206 (45.63%), Postives = 134/206 (65.05%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVK 616
            M+ DMAHI+GLVA G+ PSP  YAD VTTTTHK+LRGPRG  I  ++               Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+ GF E++  K+AYF + +++
Sbjct:  196 MMVDMAHIAGLVATGLHPSPVPYADFVTTTTHKTLRGPRGGAILCKE--------------KYAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB6 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=glyA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.886e-48
Identity = 94/206 (45.63%), Postives = 134/206 (65.05%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVK 616
            M+ DMAHI+GLVA G+ PSP  YAD VTTTTHK+LRGPRG  I  ++               Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+ GF E++  K+AYF + +++
Sbjct:  196 MMVDMAHIAGLVATGLHPSPVPYADFVTTTTHKTLRGPRGGAILCKE--------------KYAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB1 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.886e-48
Identity = 94/206 (45.63%), Postives = 134/206 (65.05%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVK 616
            M+ DMAHI+GLVA G+ PSP  YAD VTTTTHK+LRGPRG  I  ++               Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+ GF E++  K+AYF + +++
Sbjct:  196 MMVDMAHIAGLVATGLHPSPVPYADFVTTTTHKTLRGPRGGAILCKE--------------KYAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_DESAP (Serine hydroxymethyltransferase OS=Desulforudis audaxviator (strain MP104C) GN=glyA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.030e-47
Identity = 99/198 (50.00%), Postives = 130/198 (65.66%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            ++ DMAHI+GL+AAG+  SP  YADVVTTTTHK+LRGPRG MI   +              +Y   I++AVFPG+QGGP  H I   AVAL +A  PE+K YQEQ++ N    AQ L E G+ELV+GGT+ HL+LV+L+NKG+ G+  E +L+ V +  NKN VP D     V  GIR+GTPA+T+ G  ED   ++A
Sbjct:  197 LMIDMAHIAGLIAAGLHMSPVPYADVVTTTTHKTLRGPRGGMILCPE--------------EYAAAIDKAVFPGIQGGPLMHVIAAKAVALGEAQRPEFKTYQEQIVKNARALAQALQERGFELVAGGTDTHLILVDLRNKGLTGAVAEDLLDRVDVTVNKNMVPFDPQPPRVTSGIRIGTPAVTTRGMKEDSMVQIA 380          
The following BLAST results are available for this feature:
BLAST of EY665040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CLOBK4.623e-4845.63Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA1_RALEJ4.623e-4841.50Serine hydroxymethyltransferase 1 OS=Ralstonia eut... [more]
GLYA_LEGPL7.886e-4851.31Serine hydroxymethyltransferase OS=Legionella pneu... [more]
GLYA_EUBR37.886e-4849.49Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_CLOBM7.886e-4845.63Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBJ7.886e-4845.63Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBH7.886e-4845.63Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB67.886e-4845.63Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB17.886e-4845.63Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_DESAP1.030e-4750.00Serine hydroxymethyltransferase OS=Desulforudis au... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665040 ID=EY665040; Name=EY665040; organism=Citrus sinensis; type=EST; length=922bp
AATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCA
TCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAA
TCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAA
AGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAA
TAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACA
ATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAA
AGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCAAAATTTGCACAGACTC
TGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTA
GTGTTGGTGAATTTGAAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAA
AGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGG
ATGTGTCGGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTT
ACTTCTANGGGATTTGTTGAGGATGATTTTGCCAAGGTAGCATATTTCTT
TGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGNAACTCAAGGAA
ACAAGTTGAAAGATTTCGTGGGCCACACACAGTCCGCTAACTTNCAATNC
GAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCATTNCCC
CACATTGGGGTTGAAAAGGGATACATGAAAGTCCAGAACTGAAAGAAAAC
GCCACTGTACTANAGTAGCGGGAGCCAGCCTGTATGAGCTTTTATTACAC
AGAGCNACGAGGGATGAAATGTNACTACGATGATGAGCCATGGATCACTA
TTGACCCTGGGATTTGCGGCTT
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