EY665040

Overview
NameEY665040
Unique NameEY665040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_DESAA (Serine hydroxymethyltransferase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=glyA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.030e-47
Identity = 98/198 (49.49%), Postives = 129/198 (65.15%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSXGFVEDDFAKVA 592
            ++ DMAHI+GLVAAG  PSP  YADVVTTTTHK+LRGPRG MI   KG              + +K++  +FPG+QGGP  H I   AVA K+A TPE+KAYQ+QV+ N +  A+ L++ G +LVSGGT+NH++L+NL N  I G   E ++E   I  NKNT+P D +   V  GIR+GTP +TS G  E +   +A
Sbjct:  196 LMVDMAHIAGLVAAGEHPSPLPYADVVTTTTHKTLRGPRGGMILSNKG--------------FGKKLSSQIFPGIQGGPLMHVIAAKAVAFKEALTPEFKAYQQQVVKNAACLAKRLMDNGVDLVSGGTDNHMMLLNLSNLDITGKEAEGLVEQAGITVNKNTIPFDKNGPAVTSGIRVGTPTITSRGMKEPEMELIA 379          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_ACIAC (Serine hydroxymethyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.030e-47
Identity = 96/190 (50.53%), Postives = 126/190 (66.32%), Query Frame = 2
Query:   11 DMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDD 577
            D+AH +GLV AG  P+P  +ADVVT+TTHKSLRGPRG +I  +               ++E+ IN A+FPGLQGGP  H I   AVA K+A TPE+KAYQ+QV  N   FA+TL+E G  ++SG TE+H++LV+L+ KGI G   E  L   HI  NKN++P D    MV  GIR+GTPA+T+ GF E++
Sbjct:  200 DIAHYAGLVVAGEYPNPVPFADVVTSTTHKSLRGPRGGIILMKA--------------EHEKAINSAIFPGLQGGPLEHVIAAKAVAFKEALTPEFKAYQQQVAKNAKVFAETLIERGLRIISGRTESHVMLVDLRAKGITGKAAEAALGQAHITINKNSIPNDPEKPMVTSGIRVGTPAITTRGFKEEE 375          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_SYMTH (Serine hydroxymethyltransferase OS=Symbiobacterium thermophilum GN=glyA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.345e-47
Identity = 98/205 (47.80%), Postives = 131/205 (63.90%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAV 613
            ++ DMAH +GL A G  P+P E+A VVTTTTHK+LRGPRG  I  +K              ++ ++I++AVFPG+QGGP  H I   AVA KQ + P+Y+AY  QV+ N    AQ LLE GY LV+GGT+NHL+LV+L+ KGI G   E +L+ V I  NKN +P D    MV  GIR+GTPA+T+ G  E +  ++A   D A+
Sbjct:  194 LMVDMAHFAGLAATGYYPNPVEHAHVVTTTTHKTLRGPRGGAILCKK--------------EFAKEIDKAVFPGMQGGPLMHIIAAKAVAFKQLSDPDYRAYCGQVVKNAKALAQALLERGYRLVTGGTDNHLMLVDLRPKGITGRDAEHLLDRVSITVNKNAIPNDPEKPMVTSGIRIGTPAMTTRGMKEAEMVQIADLIDRAI 384          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_LEGPC (Serine hydroxymethyltransferase OS=Legionella pneumophila (strain Corby) GN=glyA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.757e-47
Identity = 97/191 (50.79%), Postives = 128/191 (67.02%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVE 571
            ++AD+AH++GLVA G+ PSP  YADVVTTTTHK+LRGPRG +I        + K+ +E+    E+K+N +VFPG+QGGP  H I   AVA  +A  PE+K YQ+QVL+N       L   GY++VSGGT+NHL+LV+L NKGI G   +  L   +I  NKN+VP D  S  V  G+R+GTPA T+ GF E
Sbjct:  198 LMADIAHVAGLVAVGLYPSPVPYADVVTTTTHKTLRGPRGGLI--------LCKENEEI----EKKLNSSVFPGMQGGPLMHVIAAKAVAFAEALLPEFKTYQQQVLANARTMCSVLQSRGYDIVSGGTDNHLLLVDLINKGITGKEADAALGRANITVNKNSVPNDPRSPFVTSGLRLGTPAATTRGFKE 376          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_GEOLS (Serine hydroxymethyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=glyA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.757e-47
Identity = 99/205 (48.29%), Postives = 129/205 (62.93%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAV 613
            ++ DMAHI+GLVAAGV P+P  YA+ VTTTTHK+LRGPRG MI  R+              +Y + IN  +FPG+QGGP  H I   AVA K+A  PE+K YQ+Q++ N +K A+ L+  G++L SGGT+NHL+L+N     I G   E+ L+   I  NKNTVP +  S  V  GIR+GTPA TS G  E +  +VA F   AV
Sbjct:  194 VMVDMAHIAGLVAAGVHPNPVPYAEFVTTTTHKTLRGPRGGMILCRE--------------EYAKTINSQIFPGIQGGPLMHVIAAKAVAFKEALQPEFKTYQQQIVKNAAKLAECLMAKGFKLTSGGTDNHLMLINFTGTEITGKAAEEALDKAGITVNKNTVPFETRSPFVTSGIRVGTPACTSHGLKETEMEQVAGFIADAV 384          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_CUPTR (Serine hydroxymethyltransferase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=glyA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.757e-47
Identity = 104/253 (41.11%), Postives = 144/253 (56.92%), Query Frame = 2
Query:    5 LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGNKLKDFVGHTQSANXQXEIAKLRHDVEEYAKHXPTLG 760
            + DMAH +GL+AAGV P+P  +AD VTTTTHKSLRGPRG +I  +               ++E+ IN ++FPG+QGGP  H I G AVA K+A TPE+KAYQ+QV+ N +  A+TL+  G  +VSG TE+H++LV+L+ K I G   E++L   H+  NKN +P D     V  GIR+G+PA+T+ GF E++   V                   GN + D + +   A     IA +R  V    K  P  G
Sbjct:  199 MVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVILMKA--------------EHEKAINSSIFPGIQGGPLMHVIAGKAVAFKEALTPEFKAYQQQVVKNAAVLAETLIARGLRIVSGRTESHVMLVDLRAKNITGKEAERILGEAHLTVNKNAIPNDPEKPFVTSGIRVGSPAMTTRGFKEEEARIV-------------------GNLIADVLDNPHDA---ANIAAVREQVSALTKRFPVYG 415          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_POLSQ (Serine hydroxymethyltransferase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.294e-47
Identity = 107/253 (42.29%), Postives = 144/253 (56.92%), Query Frame = 2
Query:    5 LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVKLAVKIKSXTQGNKLKDFVGHTQSANXQXEIAKLRHDVEEYAKHXPTLG 760
            + DMAH +GLVAAGV P+P  +AD+VT+TTHKSLRGPRG +I  +               ++E+ IN AVFPGLQGGP  H I G A A K+A  P +K YQ+QV++N    A+TL+  G  +VSGGT++H++LV+L+ K + G   E VL   HI  NKN +P D    MV  GIR+G+PA+T+ GF E +  +V                   GN + D +    + N    IAK+R  V E  K  P  G
Sbjct:  198 MVDMAHYAGLVAAGVYPNPVPHADIVTSTTHKSLRGPRGGIILMKA--------------EHEKAINSAVFPGLQGGPLMHVIAGKAAAFKEAAEPGFKDYQKQVVANAKALAETLIARGLRIVSGGTDSHVMLVDLRAKKMTGKEAEHVLGEAHITCNKNGIPNDPEKPMVTSGIRLGSPAMTTRGFKEAEAVQV-------------------GNFIADVL---DNPNDPENIAKVRAQVAELTKRFPVYG 414          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_ONYPE (Serine hydroxymethyltransferase OS=Onion yellows phytoplasma GN=glyA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.997e-47
Identity = 101/208 (48.56%), Postives = 139/208 (66.83%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEY-ADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKG--IDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAV 613
            ++AD+AHI+GLVA G+ P PFE  ADVVT+T HK+LRGPRG +I   K         +EVF    +KIN+ +FPG+QGGP  HTI   AVA ++A  P +K YQ+QV+ N + FA+   + GY +VSGGT+NHL L+++K+K     GS++  +LE ++I  NKNT+P D     V  GIR+GTPA+T+ GF E+DF  VA   D A+
Sbjct:  197 LMADIAHIAGLVACGLHPCPFEANADVVTSTMHKTLRGPRGGLILTNK---------EEVF----KKINRGIFPGIQGGPCIHTIAAKAVAFQEAMMPSFKEYQKQVIKNANTFAKAFQQKGYRIVSGGTDNHLFLIDVKHKNPEFTGSKIANMLEKINIVVNKNTIPFDQEKPFVTSGIRIGTPAMTTVGFRENDFILVADLMDKAI 391          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_CLOCE (Serine hydroxymethyltransferase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=glyA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.997e-47
Identity = 97/198 (48.99%), Postives = 128/198 (64.65%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            ++ DMAHI+GLVAAGV PSP  YADVVTTTTHK+LRGPRG MI  ++              +Y +KI+ AVFPG QGGP  H I   AV+ K+A T ++K YQ+ ++ N    A  L+E G++LVS GT+NHL+L+NL N  I G   +  L+ V I  NKN +P D  S  +  GIR+GTPA+TS G  E+D  ++A
Sbjct:  197 LMVDMAHIAGLVAAGVHPSPVPYADVVTTTTHKTLRGPRGGMILCKQ--------------EYAKKIDSAVFPGNQGGPLMHVIAAKAVSFKEALTDDFKIYQQNIVKNAKALASALMEKGFKLVSDGTDNHLMLINLTNMNITGKEAQHKLDEVCITCNKNGIPFDTQSPFITSGIRLGTPAVTSRGMNEEDMKEIA 380          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_CARHZ (Serine hydroxymethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=glyA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.997e-47
Identity = 96/206 (46.60%), Postives = 136/206 (66.02%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAVK 616
            ++ DMAHI+GLVAAG+ PSP  YADVVTTTTHK+LRGPRG +IF +               ++  KI++ VFPG+QGGP  H I   AVA K+A +PE++ YQ+QV++N    A+ L + G  LVSGGT+NHL+LV+++  G+ G R E++L+ + +  NKN +P D  S  V  GIR+GTPA+T+ G  E + A++A      +K
Sbjct:  198 LMVDMAHIAGLVAAGLHPSPIPYADVVTTTTHKTLRGPRGGVIFCKA--------------EHAAKIDKTVFPGVQGGPLMHVIAAKAVAFKEALSPEFREYQQQVVNNAKALAEELKKQGLRLVSGGTDNHLMLVDVRPVGLTGKRAEQLLDEIGVTVNKNAIPYDPESPNVTSGIRIGTPAVTTRGMKEGEMAEIAEIIALVLK 389          
The following BLAST results are available for this feature:
BLAST of EY665040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_DESAA1.030e-4749.49Serine hydroxymethyltransferase OS=Desulfatibacill... [more]
GLYA_ACIAC1.030e-4750.53Serine hydroxymethyltransferase OS=Acidovorax aven... [more]
GLYA_SYMTH1.345e-4747.80Serine hydroxymethyltransferase OS=Symbiobacterium... [more]
GLYA_LEGPC1.757e-4750.79Serine hydroxymethyltransferase OS=Legionella pneu... [more]
GLYA_GEOLS1.757e-4748.29Serine hydroxymethyltransferase OS=Geobacter lovle... [more]
GLYA_CUPTR1.757e-4741.11Serine hydroxymethyltransferase OS=Cupriavidus tai... [more]
GLYA_POLSQ2.294e-4742.29Serine hydroxymethyltransferase OS=Polynucleobacte... [more]
GLYA_ONYPE2.997e-4748.56Serine hydroxymethyltransferase OS=Onion yellows p... [more]
GLYA_CLOCE2.997e-4748.99Serine hydroxymethyltransferase OS=Clostridium cel... [more]
GLYA_CARHZ2.997e-4746.60Serine hydroxymethyltransferase OS=Carboxydothermu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665040 ID=EY665040; Name=EY665040; organism=Citrus sinensis; type=EST; length=922bp
AATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCA
TCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAA
TCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAA
AGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAA
TAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACA
ATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAA
AGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCAAAATTTGCACAGACTC
TGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTA
GTGTTGGTGAATTTGAAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAA
AGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGG
ATGTGTCGGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTT
ACTTCTANGGGATTTGTTGAGGATGATTTTGCCAAGGTAGCATATTTCTT
TGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGNAACTCAAGGAA
ACAAGTTGAAAGATTTCGTGGGCCACACACAGTCCGCTAACTTNCAATNC
GAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCATTNCCC
CACATTGGGGTTGAAAAGGGATACATGAAAGTCCAGAACTGAAAGAAAAC
GCCACTGTACTANAGTAGCGGGAGCCAGCCTGTATGAGCTTTTATTACAC
AGAGCNACGAGGGATGAAATGTNACTACGATGATGAGCCATGGATCACTA
TTGACCCTGGGATTTGCGGCTT
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