EY665040

Overview
NameEY665040
Unique NameEY665040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_XANAC (Serine hydroxymethyltransferase OS=Xanthomonas axonopodis pv. citri GN=glyA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.676e-47
Identity = 96/198 (48.48%), Postives = 126/198 (63.64%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            +  DMAHI+GLVAAGV PSP E+A VVT+TTHK+LRGPRG +I  +   +E+ K           K+   VFPG+QGGP  H I   AVA K+A  P +K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+ G+ E D   +A
Sbjct:  197 LFVDMAHIAGLVAAGVYPSPMEHAHVVTSTTHKTLRGPRGGIIVAKGASEELQK-----------KLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPAFKTYQQQVVKNAQAMANTLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAITTRGYQEQDSIDLA 383          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_DICNV (Serine hydroxymethyltransferase OS=Dichelobacter nodosus (strain VCS1703A) GN=glyA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.676e-47
Identity = 95/198 (47.98%), Postives = 127/198 (64.14%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            ++ DMAH++GLVAAG+ P+P  +ADVVT+TTHK+LRGPRG +I  +                 E+K+N A+FPG QGGP  H I   AVA K+A  P ++ YQEQV+ N    A+  +  GY++VSGGT+NHL+LV+L NKG+ G      L   HI  NKN+VP D  S  V  GIR+GTPA+T+ GF  ++  KVA
Sbjct:  197 LMVDMAHVAGLVAAGLYPNPVPFADVVTSTTHKTLRGPRGGIILAKANPT------------IEKKLNSAIFPGSQGGPLMHVIAAKAVAFKEALEPSFQKYQEQVVENAKTMAKVFIARGYDIVSGGTQNHLMLVSLINKGLTGKAANDALSRAHITVNKNSVPNDPQSPFVTSGIRIGTPAITTRGFGVNEVKKVA 382          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_VARPS (Serine hydroxymethyltransferase OS=Variovorax paradoxus (strain S110) GN=glyA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.719e-47
Identity = 95/192 (49.48%), Postives = 127/192 (66.15%), Query Frame = 2
Query:    5 LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDD 577
            + D+AH +GLVAAGV P+P  +ADVVT+TTHKSLRGPRG +I  +                +E+ IN A+FPGLQGGP  H I   AVA K+A +PE+KAYQ+QV+ N    A TL E G  +VSG TE+H++LV+L+ KGI G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+ GF +++
Sbjct:  198 MVDIAHYAGLVAAGVYPNPVPHADVVTSTTHKSLRGPRGGIILMKS--------------QHEKAINSAIFPGLQGGPLMHVIAAKAVAFKEAMSPEFKAYQQQVVKNAQIVADTLTERGLRIVSGRTESHVMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFRDEE 375          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_SHISS (Serine hydroxymethyltransferase OS=Shigella sonnei (strain Ss046) GN=glyA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.719e-47
Identity = 98/198 (49.49%), Postives = 127/198 (64.14%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G +E+ K           K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T  GF E +  ++A
Sbjct:  197 LFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_SHIFL (Serine hydroxymethyltransferase OS=Shigella flexneri GN=glyA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.719e-47
Identity = 98/198 (49.49%), Postives = 127/198 (64.14%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G +E+ K           K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T  GF E +  ++A
Sbjct:  197 LFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_SHIF8 (Serine hydroxymethyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=glyA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.719e-47
Identity = 98/198 (49.49%), Postives = 127/198 (64.14%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G +E+ K           K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T  GF E +  ++A
Sbjct:  197 LFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_SHIDS (Serine hydroxymethyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=glyA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.719e-47
Identity = 98/198 (49.49%), Postives = 127/198 (64.14%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G +E+ K           K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T  GF E +  ++A
Sbjct:  197 LFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_SHIBS (Serine hydroxymethyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=glyA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.719e-47
Identity = 98/198 (49.49%), Postives = 127/198 (64.14%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G +E+ K           K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T  GF E +  ++A
Sbjct:  197 LFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_SHIB3 (Serine hydroxymethyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=glyA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.719e-47
Identity = 98/198 (49.49%), Postives = 127/198 (64.14%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVA 592
            +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G +E+ K           K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T  GF E +  ++A
Sbjct:  197 LFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of EY665040 vs. ExPASy Swiss-Prot
Match: GLYA_MOOTA (Serine hydroxymethyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=glyA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.719e-47
Identity = 99/205 (48.29%), Postives = 129/205 (62.93%), Query Frame = 2
Query:    2 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSXGFVEDDFAKVAYFFDAAV 613
            ++ DMAHI+GLVAAG+ P+P  YA  VTTTTHK++RGPRG +I   +              +Y   I++AVFPG+QGGP  H I   AVALK+A  PE+K YQEQ+++N    A  L+  G+ LVSGGT+NHL+LV+L+NK I G   E +L +V I  NKN +P D     V  GIR+GT ALTS G   D   +VA   D A+
Sbjct:  196 LMVDMAHIAGLVAAGIHPNPVPYAHFVTTTTHKTMRGPRGGIILTTR--------------EYARDIDKAVFPGVQGGPLMHVIAAKAVALKEAMLPEFKRYQEQIVTNARTLADALMGYGFNLVSGGTDNHLMLVDLRNKNITGREAEDILASVQITVNKNAIPFDPQKPSVTSGIRLGTAALTSRGMDADAMVQVARAIDLAL 386          
The following BLAST results are available for this feature:
BLAST of EY665040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_XANAC6.676e-4748.48Serine hydroxymethyltransferase OS=Xanthomonas axo... [more]
GLYA_DICNV6.676e-4747.98Serine hydroxymethyltransferase OS=Dichelobacter n... [more]
GLYA_VARPS8.719e-4749.48Serine hydroxymethyltransferase OS=Variovorax para... [more]
GLYA_SHISS8.719e-4749.49Serine hydroxymethyltransferase OS=Shigella sonnei... [more]
GLYA_SHIFL8.719e-4749.49Serine hydroxymethyltransferase OS=Shigella flexne... [more]
GLYA_SHIF88.719e-4749.49Serine hydroxymethyltransferase OS=Shigella flexne... [more]
GLYA_SHIDS8.719e-4749.49Serine hydroxymethyltransferase OS=Shigella dysent... [more]
GLYA_SHIBS8.719e-4749.49Serine hydroxymethyltransferase OS=Shigella boydii... [more]
GLYA_SHIB38.719e-4749.49Serine hydroxymethyltransferase OS=Shigella boydii... [more]
GLYA_MOOTA8.719e-4748.29Serine hydroxymethyltransferase OS=Moorella thermo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665040 ID=EY665040; Name=EY665040; organism=Citrus sinensis; type=EST; length=922bp
AATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCA
TCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAA
TCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAA
AGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAA
TAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACA
ATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAA
AGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCAAAATTTGCACAGACTC
TGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTA
GTGTTGGTGAATTTGAAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAA
AGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGG
ATGTGTCGGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTT
ACTTCTANGGGATTTGTTGAGGATGATTTTGCCAAGGTAGCATATTTCTT
TGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGNAACTCAAGGAA
ACAAGTTGAAAGATTTCGTGGGCCACACACAGTCCGCTAACTTNCAATNC
GAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCATTNCCC
CACATTGGGGTTGAAAAGGGATACATGAAAGTCCAGAACTGAAAGAAAAC
GCCACTGTACTANAGTAGCGGGAGCCAGCCTGTATGAGCTTTTATTACAC
AGAGCNACGAGGGATGAAATGTNACTACGATGATGAGCCATGGATCACTA
TTGACCCTGGGATTTGCGGCTT
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