EY665027

Overview
NameEY665027
Unique NameEY665027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8139 contig Csv1_Contig8139:811..1593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA_RHORT (Glycogen synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glgA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.249e-18
Identity = 59/143 (41.26%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   34 YPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGID 459
            YP  A     ++  LAH+I   ADF+L+PSRFEPCGL QL+A+RYGT+P+V  TGGL D+V     G        D    D     A+   + RA+  Y  +A L ++ + GM+QD SWK  AK++      L V GS  G D
Sbjct:  350 YPGAAAVHVGYDEHLAHLIEGAADFLLVPSRFEPCGLTQLYALRYGTIPVVRRTGGLADSVSHLDDGPNGTGIVFDHALPD-----ALEWAIGRAMTLYRDKATLNKVRQRGMSQDFSWKRSAKEY------LRVYGSMVGGD 481          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOMG (Glycogen synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.249e-18
Identity = 59/125 (47.20%), Postives = 70/125 (56.00%), Query Frame = 1
Query:   64 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 414
            F  PLA  I AG D  L+PSRFEPCGL QL A+ YGTVPIV  TGGL DTV        EG  GF    FS D          A    V+RALA Y   +   ++M+ GM +D+SW+  A K+EE
Sbjct:  360 FKEPLAPKIYAGCDMFLMPSRFEPCGLSQLIALSYGTVPIVRRTGGLADTVIDVTANPREG-NGFSFTEFSAD----------ACWDAVQRALAAYRDREGWRKIMRRGMLRDVSWRSAAGKYEE 473          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA_KOSOT (Glycogen synthase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=glgA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18
Identity = 51/126 (40.48%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   34 YPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 408
            +PEK     TFN+ LA  I AG+D  L+PSR+EPCGL Q+ AMRYGT+P+V FTGGL DTV+E    F   +   +    +  +   +   V +A+  Y  + L  ++M N M  D SW   A+++
Sbjct:  337 FPEKVSANITFNVDLAQKIYAGSDMFLMPSRYEPCGLGQMFAMRYGTIPVVRFTGGLRDTVKE----FNPETLEGNGFGFEEYNPDKLLEAVEKAIKIYENKTLWNQLMLNAMNTDCSWDKSAREY 458          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOSL (Glycogen synthase 2 OS=Geobacter sulfurreducens GN=glgA2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18
Identity = 58/124 (46.77%), Postives = 71/124 (57.26%), Query Frame = 1
Query:   64 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 411
            FN PLA  I AG+D  L+PSRFEPCGL QL AMRYGTVP+V  TGGL DTV        EG TGF    F+ D          A    + RALA Y   ++   +M+ GM +D+SW   A ++E
Sbjct:  360 FNDPLAPKIYAGSDLFLMPSRFEPCGLSQLIAMRYGTVPVVRHTGGLRDTVVDVTRHPREG-TGFTFEDFTAD----------ACWEAIERALAGYRDRESWRRIMRRGMHRDVSWHNAAGRYE 472          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: SSY22_ORYSJ (Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.011e-18
Identity = 57/132 (43.18%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   40 EKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT--QALAEMMKNGMAQDLSWKGPAKKWEETLL 423
            +K RG   F++ LAH I AGAD +L+PSRFEPCGL QL+AM YGTVP+V   GGL DTV   + F    +G      EA   +D       +   L TY    ++   +   GMAQDLSW   A+ +E+ L+
Sbjct:  563 DKVRGWVGFSVQLAHRITAGADVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFADTGLGWTFDRAEANRMID------ALGHCLNTYRNYKESWRGLQARGMAQDLSWDHAAELYEDVLV 688          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA_RHIEC (Glycogen synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=glgA PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.011e-18
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 1
Query:   64 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 408
            +N P++H++ AG D I+IPSRFEPCGL QL+A+RYG VPIV  TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  354 YNEPMSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQ-FSPVTETGMLQAIRRAMHFYADRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA_FERNB (Glycogen synthase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glgA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.545e-18
Identity = 54/126 (42.86%), Postives = 75/126 (59.52%), Query Frame = 1
Query:   34 YPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT-QALAEMMKNGMAQDLSWKGPAKKW 408
            YPEK      F+I LA  I AG D  L+PSR+EPCGL Q++++RYGT+PIV +TGGL DTV+E     + G+     E  DP   A +   + RA+  Y + +    ++KN M  DLSW   AK++
Sbjct:  351 YPEKYSINLKFDIVLAQKIYAGCDMFLMPSRYEPCGLGQMYSLRYGTIPIVRYTGGLADTVKEYNPETKEGN-GFGFEGFDP---AHLLKAMARAIYFYNSKEDWNTLIKNAMTMDLSWDKSAKEY 472          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA_ANASK (Glycogen synthase OS=Anaeromyxobacter sp. (strain K) GN=glgA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.545e-18
Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 1
Query:   34 YPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEE-----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 411
            +P++      F+  LAH I AGAD  L+PSRFEPCGL Q++++RYGTVP+V   GGL DTVE+       TGF+   ++            A+ T  RRAL  +   +A   +++ GMA+D SW+  A ++E
Sbjct:  346 HPDRVAARIGFDEGLAHRIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRAVGGLADTVEDFDGVARGTGFRFSEYTPQ----------ALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPS (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=glgA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.116e-17
Identity = 55/132 (41.67%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   34 YPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEG-----FTGFQMG-SFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 408
            YP +   V  ++  LAH I AGAD +L+PSRFEPCGL QL A+RYG VP+V   GGL DTV +       TG   G  FS       PV    ++  + +  A Y   A    +  NGM  D+SWK PA+ +
Sbjct:  348 YPGQVGAVIGYDEALAHQIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS-------PVTADMLTAALTKTRALYADHATWRNLQINGMTTDVSWKNPAQHY 472          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: SSG2_PEA (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.458e-17
Identity = 52/130 (40.00%), Postives = 74/130 (56.92%), Query Frame = 1
Query:   40 EKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEETLL 423
            +K R    F++ +AH I AG+D +L+PSRFEPCGL QL+AM YGTVP+V   GGL DTV+  F  F            D  +   +   +   L TY    ++   + + GM+QDLSW   A+++EE L+
Sbjct:  621 DKIRSWVGFSVKMAHRITAGSDILLMPSRFEPCGLNQLYAMSYGTVPVVHGVGGLRDTVQP-FNPFDESGVG---WTFDRAEANKLMAALWNCLLTYKDYKKSWEGIQERGMSQDLSWDNAAQQYEEVLV 746          
The following BLAST results are available for this feature:
BLAST of EY665027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
GLGA_RHORT2.249e-1841.26Glycogen synthase OS=Rhodospirillum rubrum (strain... [more]
GLGA2_GEOMG2.249e-1847.20Glycogen synthase 2 OS=Geobacter metallireducens (... [more]
GLGA_KOSOT2.938e-1840.48Glycogen synthase OS=Kosmotoga olearia (strain TBF... [more]
GLGA2_GEOSL2.938e-1846.77Glycogen synthase 2 OS=Geobacter sulfurreducens GN... [more]
SSY22_ORYSJ5.011e-1843.18Soluble starch synthase 2-2, chloroplastic/amylopl... [more]
GLGA_RHIEC5.011e-1841.38Glycogen synthase OS=Rhizobium etli (strain CFN 42... [more]
GLGA_FERNB6.545e-1842.86Glycogen synthase OS=Fervidobacterium nodosum (str... [more]
GLGA_ANASK6.545e-1840.15Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA_RHOPS1.116e-1741.67Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
SSG2_PEA1.458e-1740.00Granule-bound starch synthase 2, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665027 ID=EY665027; Name=EY665027; organism=Citrus sinensis; type=EST; length=782bp
ATTCCACAGGCTCGACCCACGCGTCCGATACTGTATCCTGAGAAAGCCAG
AGGAGTAGCGACCTTCAATATTCCTCTGGCGCATATGATAATAGCAGGAG
CTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGTCTCATTCAA
TTACATGCCATGCGTTATGGAACCGTACCTATCGTGGTTTTCACTGGTGG
TTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGATGGGAAGCT
TCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCTGCAGTGTCC
ACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGCTTTGGCTGA
AATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAGGACCAGCTA
AGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGTAGTGAACCT
GGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAATGTGGCCAC
TCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGACCGCAAACA
TGTTCCTGTAATTCTCCACAACCCAAGATATTACTTANGAAATAACATAG
GTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTTTGGAGTTGA
GACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTGTTTTACAGT
TTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAATGAAAAAGT
CAACTGAACAAGTTTATAGATTCNNNNNNAAA
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