EY665027

Overview
NameEY665027
Unique NameEY665027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8139 contig Csv1_Contig8139:811..1593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA_ANOFW (Glycogen synthase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=glgA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.487e-17
Identity = 61/145 (42.07%), Postives = 83/145 (57.24%), Query Frame = 1
Query:   34 YPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVE-------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLEVAGS 444
            YP++ R    F+  LAH I AGAD  L+PS+FEPCGL Q+ AMRYG VPIV  TGGL DTV+       EG TGF   +F+             +  T++RA + Y  + + E +MK  M++D SW   A K+ + L +  +AGS
Sbjct:  346 YPDRVRVYIGFSEQLAHQIYAGADMFLMPSKFEPCGLGQMIAMRYGAVPIVRETGGLNDTVQSFNELTKEG-TGFTFKNFNAH----------DMLYTIQRARSFYEQKEIWETIMKQAMSRDYSWAKSAFKYNQ-LYDELMAGS 478          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA1_RHIME (Glycogen synthase 1 OS=Rhizobium meliloti GN=glgA1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.487e-17
Identity = 50/122 (40.98%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   55 VATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEA---VDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 408
            V  ++ PL+H++ AGAD ILIPSRFEPCGL QL+ +RYG VP+V  TGGL DT+ +        + S  C       PV    +   +RR L  Y    L A +   GM  D+SW   A+++
Sbjct:  352 VTGYDEPLSHLMQAGADAILIPSRFEPCGLTQLYGLRYGCVPVVARTGGLTDTIIDA----NEAALSAKCATGFHFLPVTTDGLRLAIRRVLRAYNEPKLWARLQYQGMKSDVSWAKSAERY 469          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA_RHOP2 (Glycogen synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=glgA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.248e-17
Identity = 54/132 (40.91%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   34 YPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEG-----FTGFQMG-SFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 408
            YP +   V  ++  LAH I AGAD +L+PSRFEPCGL QL A+RYG VP+V   GGL DTV +       TG   G  FS       PV    ++  + +  A +   A    +  NGM  D+SWK PA+ +
Sbjct:  348 YPGQVGAVIGYDEALAHQIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS-------PVTAQMLAKALTKTAALHADHAAWRNLQINGMTTDVSWKNPAQHY 472          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA_RHIL3 (Glycogen synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=glgA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.248e-17
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   64 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 408
            +N P++H++ AG D I+IPSRFEPCGL QL+ +RYG VPIV  TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  354 YNEPMSHLMQAGCDAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQFA-PVTETGMLQAIRRAMHFYQDRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA_AZOSE (Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN=glgA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.248e-17
Identity = 60/150 (40.00%), Postives = 81/150 (54.00%), Query Frame = 1
Query:    7 QARPTRPILYPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEE-GFTGFQMGSFS--VDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGS 444
            QA   R    P++   V  F+  LAH I AGAD  ++PSRFEPCGL Q+++ RYGT PIV  TGGLVD+V +    G   G  S  +  EA      AA+   V RAL  +  + A   +  NGMA+D SW G A ++    + +  A +
Sbjct:  348 QAWRQRAAARPDRIAAVIGFDERLAHRIEAGADAFVMPSRFEPCGLNQMYSQRYGTPPIVRATGGLVDSVGDFSVDGLHRGEASGFLFAEATP----AALVEAVDRALKVFADRVAWRTLCCNGMARDFSWGGSAGRYARLYVAMRAAAA 493          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA1_GEOMG (Glycogen synthase 1 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.248e-17
Identity = 54/135 (40.00%), Postives = 77/135 (57.04%), Query Frame = 1
Query:   34 YPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEE------GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT--YGTQALAEMMKNGMAQDLSWKGPAKKWEE 414
            YP+K      +N PL+H I AGADF L+PS FEPCGL Q++++RYGT+PIV  TGGL D+VE         TGF+  S           D  A+  TV  A+ T  +   A+  ++ N MA+  +W+  A ++E+
Sbjct:  356 YPDKFNIFVGYNNPLSHQIEAGADFFLMPSAFEPCGLNQMYSLRYGTLPIVRATGGLDDSVENFDEKTLVGTGFKFWS----------RDAGALFDTVGWAVHTWYHRKDAMERLIANAMAKRFTWEDAAARYED 480          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA_DESAP (Glycogen synthase OS=Desulforudis audaxviator (strain MP104C) GN=glgA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.242e-17
Identity = 54/146 (36.99%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   28 ILYPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEETLLN-LEVAGSEPGI 456
            + +P K      FN+ LA  I AG+D  L+PSRFEPCGL QL ++RYGT+PIV  TGGL DTV E    + + +   +       D  A+ + + RAL  Y    +A   +++N M  D SW   A ++ +   + +E    E GI
Sbjct:  356 VQHPGKIAAHIGFNVVLAQRIYAGSDMFLMPSRFEPCGLGQLISLRYGTIPIVRETGGLADTVNE----YDLATGGGNGFVFKEYDARALYSAIARALKLYREDQEAWGRLVRNAMEMDFSWARSAVEYLQVYRDAMEKVSEERGI 497          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA1_GEOSL (Glycogen synthase 1 OS=Geobacter sulfurreducens GN=glgA1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.242e-17
Identity = 53/131 (40.46%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   34 YPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 414
            YPEK      +N  L+H I AG+DF ++PS FEPCGL Q++++RYGT+PIV  TGGL D+V    E+  TG     +S D +A+       V T  RR        A+A ++ N MA+  +W+  A ++EE
Sbjct:  356 YPEKFGLYIGYNNGLSHRIEAGSDFFVMPSAFEPCGLNQMYSLRYGTLPIVRATGGLDDSVENFDEQNLTGNGFKFWSHDADALFDTVGWTVHTWYRR------KDAMAALIGNAMAKRFTWEDSAARYEE 480          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSJ (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17
Identity = 52/129 (40.31%), Postives = 73/129 (56.59%), Query Frame = 1
Query:   43 KARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEETLL 423
            K RG   F++ +AH I AGAD +++PSRFEPCGL QL+AM YGTVP+V   GGL DT+   F  F+        +  +P     +   +   L TY    ++   +   GM+QDLSW   A+ +EE L+
Sbjct:  680 KVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTM-SAFDPFEDTGLGWTFDRAEP---HKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLV 804          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: GLGA2_NITOC (Glycogen synthase 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17
Identity = 55/135 (40.74%), Postives = 75/135 (55.56%), Query Frame = 1
Query:   34 YPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTV---------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 408
            YP +     +++  LAH + AGAD  L+PSRFEPCGL QL+A+RYGTVPI   TGGL DT+         +E  TGF     S           +A+ T ++RALA Y  ++    +   GMAQ+ SW+  AK +
Sbjct:  348 YPNQIGVSISYDERLAHGVQAGADIFLMPSRFEPCGLTQLYALRYGTVPIARRTGGLSDTIVDATEKNLRQELATGFTFTESS----------PSALLTAIQRALACYAQSRQWRRLALTGMAQNFSWQTSAKAY 472          
The following BLAST results are available for this feature:
BLAST of EY665027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
GLGA_ANOFW2.487e-1742.07Glycogen synthase OS=Anoxybacillus flavithermus (s... [more]
GLGA1_RHIME2.487e-1740.98Glycogen synthase 1 OS=Rhizobium meliloti GN=glgA1... [more]
GLGA_RHOP23.248e-1740.91Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_RHIL33.248e-1740.52Glycogen synthase OS=Rhizobium leguminosarum bv. v... [more]
GLGA_AZOSE3.248e-1740.00Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN... [more]
GLGA1_GEOMG3.248e-1740.00Glycogen synthase 1 OS=Geobacter metallireducens (... [more]
GLGA_DESAP4.242e-1736.99Glycogen synthase OS=Desulforudis audaxviator (str... [more]
GLGA1_GEOSL4.242e-1740.46Glycogen synthase 1 OS=Geobacter sulfurreducens GN... [more]
SSY23_ORYSJ5.541e-1740.31Soluble starch synthase 2-3, chloroplastic/amylopl... [more]
GLGA2_NITOC5.541e-1740.74Glycogen synthase 2 OS=Nitrosococcus oceani (strai... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665027 ID=EY665027; Name=EY665027; organism=Citrus sinensis; type=EST; length=782bp
ATTCCACAGGCTCGACCCACGCGTCCGATACTGTATCCTGAGAAAGCCAG
AGGAGTAGCGACCTTCAATATTCCTCTGGCGCATATGATAATAGCAGGAG
CTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGTCTCATTCAA
TTACATGCCATGCGTTATGGAACCGTACCTATCGTGGTTTTCACTGGTGG
TTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGATGGGAAGCT
TCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCTGCAGTGTCC
ACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGCTTTGGCTGA
AATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAGGACCAGCTA
AGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGTAGTGAACCT
GGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAATGTGGCCAC
TCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGACCGCAAACA
TGTTCCTGTAATTCTCCACAACCCAAGATATTACTTANGAAATAACATAG
GTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTTTGGAGTTGA
GACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTGTTTTACAGT
TTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAATGAAAAAGT
CAACTGAACAAGTTTATAGATTCNNNNNNAAA
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