EY665021

Overview
NameEY665021
Unique NameEY665021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665021 vs. ExPASy Swiss-Prot
Match: GCSPB_SYNWW (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.128e-38
Identity = 90/241 (37.34%), Postives = 134/241 (55.60%), Query Frame = 1
Query:   55 EVETAI---PSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELMNAAEANMDNLSTLMVTYPSTHGVYERSIDEICKINSRYGGQVYMDGANMNAXGRLTSPG 768
            E+E A    P  L  E+P L         +E E++R+   L  +   + +   PLGSCTMK N          P FAN+HP+ P +  QG  E+     +  C I G D F+LQP AGA GE  GLM+I+AYH+ R D  R   ++P SAHGTNPATA + G ++V V ++ +G +++++L     +    ++ LM+T P+T G++E+ I+EI  +    GG +Y DGAN+N    +  PG
Sbjct:   25 EIEPAAEINPEFLRAEAPLLPEL------SEVEVVRHYVELSQRAYGVDNGFYPLGSCTMKYNPKINEWAARLPGFANLHPYQPEESVQGALELLYRAEKLCCEIGGMDRFTLQPAAGAHGELTGLMIIKAYHQHRQDLARTKILVPDSAHGTNPATAHVLGFEVVEVKSNEEGLVDLQDLKACMSS---EVAGLMLTNPNTLGLFEKEIEEIATVVHADGGLLYYDGANLNGIVGVARPG 256          
BLAST of EY665021 vs. ExPASy Swiss-Prot
Match: GCSPB_NITMU (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.128e-38
Identity = 95/235 (40.43%), Postives = 127/235 (54.04%), Query Frame = 1
Query:   64 TAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELMNAAEANMDNLSTLMVTYPSTHGVYERSIDEICKINSRYGGQVYMDGANMNAXGRLTSPG 768
            T IP  L R++  L   V     +E + +R+   L  K  S+     PLGSCTMK N          P F   HP +P    QG+      L E L  +TG    SL P AGA GE  G+ +IRAYH++RGD  R   I+P +AHGTNPATA MCG K+V + TD +GN+++  L  A        + LM+T PST GV+E ++ E+ +I  + GG +Y DGAN+NA      PG
Sbjct:   24 TDIPEKLLRKTLPLLPEV-----SEMDAVRHYTRLSQKNFSIDTHFYPLGSCTMKYNPRACNSLAMLPQFLARHPRSPESTGQGFLACMYELQEILKDVTGMAGVSLTPMAGAQGELIGIAMIRAYHESRGDTARTEIIVPDAAHGTNPATAVMCGYKVVEIATDKEGNVDMAALKAAVG---PKTAGLMLTNPSTLGVFEENVAEMSRIVHQAGGLLYYDGANLNAILGKVKPG 250          
BLAST of EY665021 vs. ExPASy Swiss-Prot
Match: GCSPB_STAES (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.474e-38
Identity = 86/212 (40.57%), Postives = 122/212 (57.55%), Query Frame = 1
Query:  133 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELMNAAEANMDNLSTLMVTYPSTHGVYERSIDEICKINSRYGGQVYMDGANMNAXGRLTSPG 768
            +E +L+R+   L +K   +     PLGSCTMK N            F+  HP    +  QG  E+  +L E L  ITG D  +LQP AGA GE+  LM+ +AYH+  G  HR+  I+P SAHGTNPA+A+  G K V+V ++ +G ++IE+L        DN + +M+T P+T G++E++I EI KI    GG +Y DGAN+NA      PG
Sbjct:   52 SELDLVRHYTELSNKNFGVDTGFYPLGSCTMKYNPKINEKVARISGFSESHPLQEEEHVQGSLEIIYSLQEELKEITGMDEVTLQPAAGAHGEWTALMIFKAYHEKNGQSHRDEVIVPDSAHGTNPASASFAGFKSVTVKSNQRGEVDIEDLKRVVN---DNTAAIMLTNPNTLGIFEQNIIEIGKIVHEAGGLLYYDGANLNAILDKVRPG 260          
BLAST of EY665021 vs. ExPASy Swiss-Prot
Match: GCSPB_STAEQ (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.925e-38
Identity = 86/212 (40.57%), Postives = 121/212 (57.08%), Query Frame = 1
Query:  133 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELMNAAEANMDNLSTLMVTYPSTHGVYERSIDEICKINSRYGGQVYMDGANMNAXGRLTSPG 768
            +E +L+R+   L +K   +     PLGSCTMK N            F+  HP    +  QG  E+  +L E L  ITG D  +LQP AGA GE+  LM+ +AYH+  G  HR+  I+P SAHGTNPA+A+  G K V+V ++ +G ++IE+L        DN + +M+T P+T G++E+ I EI KI    GG +Y DGAN+NA      PG
Sbjct:   52 SELDLVRHYTELSNKNFGVDTGFYPLGSCTMKYNPKINEKVARISGFSESHPLQEEEHVQGSLEIIYSLQEELKEITGMDEVTLQPAAGAHGEWTALMIFKAYHEKNGQSHRDEVIVPDSAHGTNPASASFAGFKSVTVKSNQRGEVDIEDLKRVVN---DNTAAIMLTNPNTLGIFEQDIIEIGKIVHEAGGLLYYDGANLNAILDKVRPG 260          
BLAST of EY665021 vs. ExPASy Swiss-Prot
Match: GCSPB_NITEU (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Nitrosomonas europaea GN=gcvPB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.925e-38
Identity = 95/233 (40.77%), Postives = 126/233 (54.08%), Query Frame = 1
Query:   70 IPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELMNAAEANMDNLSTLMVTYPSTHGVYERSIDEICKINSRYGGQVYMDGANMNAXGRLTSPG 768
            IP  L R+S  L   V     +E + +R+   L  K  S+     PLGSCTMK N          P F + HP AP D  QG+      L E L  ITG  + SL   AGA GE  G+ +IRAYH+A GD  R   IIP +AHGTNPATA MCG K++ + T+  G+++++ L  A        + LM+T PST GV+E+ + E+ +I    GG +Y DGAN+NA      PG
Sbjct:   27 IPDHLKRKSTPLLPEV-----SEMDTVRHYTRLSQKNFSIDTEFYPLGSCTMKYNPRACNSLAMLPQFLSRHPLAPEDTGQGFLACMYELQEILKDITGMAAVSLTSMAGAQGELIGITMIRAYHEAHGDTGRTEIIIPDAAHGTNPATAVMCGYKVIEIPTNRDGDVDMDALKAAVG---PKTAGLMLTNPSTLGVFEKKVAEMSRIVHAAGGLLYYDGANLNAVLGKVKPG 251          
BLAST of EY665021 vs. ExPASy Swiss-Prot
Match: GCSPB_THEAB (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermosipho africanus (strain TCF52B) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.283e-38
Identity = 88/240 (36.67%), Postives = 136/240 (56.67%), Query Frame = 1
Query:   52 EEVETAIPSGLTRES-PYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELMNAAEANMDNLSTLMVTYPSTHGVYERSIDEICKINSRYGGQVYMDGANMNAXGRLTSPG 768
            ++ E  +P  L R+S P L         +E +++R+   L +K  S+     PLGSCTMK N        ++  F+ IHPF P +  QG  ++  +L E LC ITG D  +L P+AGA GE  G+++ RAYH +RGD  R   I+P SAHGTNPA+A M G  ++ + +   G +++ EL    +   + ++ +M+T P+T G++E+ I +I ++    G  +Y DGAN+NA    T PG
Sbjct:   22 KDYEINLPEHLLRKSLPRLPQV------SEVDVVRHYTNLSAKNYSVDVGFYPLGSCTMKYNPKVNEKVASFEEFSMIHPFQPHETVQGALKLMYDLKEMLCEITGMDDMTLIPSAGAHGELTGILISRAYHLSRGDTKRTKVIVPDSAHGTNPASARMAGFDVIEIKSGPDGRVDLNELEKVLD---ETVAVIMLTNPNTLGLFEKDILKIAQMAHDKGALLYYDGANLNAILGRTRPG 252          
BLAST of EY665021 vs. ExPASy Swiss-Prot
Match: GCSPB_BACLD (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.283e-38
Identity = 85/212 (40.09%), Postives = 124/212 (58.49%), Query Frame = 1
Query:  133 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELMNAAEANMDNLSTLMVTYPSTHGVYERSIDEICKINSRYGGQVYMDGANMNAXGRLTSPG 768
            +E +++R+   L  +   +     PLGSCTMK N          P F+ IHP       QG  E+  +L E L  ITG D  +LQP AGA GE+ GLM+IRA+H+A GDH R   I+P SAHGTNPA+A + G + V+V ++  G +++E+L    +   +  + LM+T P+T G++E +I E+ +I    GG++Y DGAN+NA      PG
Sbjct:   52 SELDIMRHYTALSRRNHGVDSGFYPLGSCTMKYNPKINEKIARIPGFSAIHPLQDEATVQGALELLYDLSEHLEEITGMDEVTLQPAAGAHGEWTGLMMIRAFHEANGDHKRTKVIVPDSAHGTNPASATVAGFETVTVKSNDDGLVDLEDLKRVVD---EETAALMLTNPNTLGLFEENILEMAEIVHSAGGKLYYDGANLNAVLSKARPG 260          
BLAST of EY665021 vs. ExPASy Swiss-Prot
Match: GCSPB_THEVO (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermoplasma volcanium GN=gcvPB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.287e-38
Identity = 93/243 (38.27%), Postives = 139/243 (57.20%), Query Frame = 1
Query:   43 SLAEEV-ETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELMNAAEANMDNLSTLMVTYPSTHGVYERSIDEICKINSRYGGQVYMDGANMNAXGRLTSPG 768
            SL+E+V E+ +P  L R+   L         +E++++R+   L     ++   + PLGSCTMK N            F NIHPF P +  QG   +  +L E+L  I+  D+ SLQP AGA GE+ G+++++ Y + +G+  R   IIP SAHGTNPA+A M G  +V V +D KG +++E L  A        +  M+T P+T G++E++I+EI KI    G  +Y DGAN+NA   +TSPG
Sbjct:   23 SLSEQVDESILPENLKRKDLELPEV------SEYDVVRHYTRLSQMNYTVDVGIYPLGSCTMKYNPKFADRVSAIDGFRNIHPFQPENTVQGALHVMYDLQEYLKKISDMDAVSLQPMAGADGEFTGILIVKKYFEDKGE-DRTEIIIPDSAHGTNPASATMGGFDVVEVPSDDKGMVDLEALRAAVS---KKTAAFMITNPNTLGIFEQNIEEIAKIIHNAGALLYYDGANLNAIFGITSPG 255          
BLAST of EY665021 vs. ExPASy Swiss-Prot
Match: GCSPB_PROA2 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.551e-38
Identity = 98/244 (40.16%), Postives = 138/244 (56.56%), Query Frame = 1
Query:   40 ASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELMNAAEANMD-NLSTLMVTYPSTHGVYERSIDEICKINSRYGGQVYMDGANMNAXGRLTSPG 768
            ASL  E + AI   L  E    T P       E E++R+   L +    +   M PLGSCTMK N            F +IHP  PA+ AQG  ++   LGE L  I G  + +LQP AGA GE  G+++IR YH +R      + ++  SAHGTNPA+AA+ G  I+SV ++A+G  +IE+L    +A +D N++ LM+T P+T G++E+ I EI ++    G  +YMDGANMNA   +T PG
Sbjct:   20 ASLDIEPQPAI--NLIPEKFLRTEPADLPEVPESEVVRHFIRLSNLNHHVDKDMYPLGSCTMKYNPKINDQTADIAGFTSIHPLQPAETAQGTLQLMYELGEMLREIAGMAAITLQPAAGAHGELTGILMIRKYHDSRASKRTKLLVVD-SAHGTNPASAALVGYDILSVKSNAEGRTDIEDL----KAKLDENVAALMLTNPNTIGLFEKDIKEIEQLVHDNGSLLYMDGANMNALMGITRPG 256          
BLAST of EY665021 vs. ExPASy Swiss-Prot
Match: GCSPB_THEM4 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.629e-37
Identity = 82/212 (38.68%), Postives = 124/212 (58.49%), Query Frame = 1
Query:  133 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELMNAAEANMDNLSTLMVTYPSTHGVYERSIDEICKINSRYGGQVYMDGANMNAXGRLTSPG 768
            +E +++R+   L +K  ++     PLGSCTMK N        +   F  IHP  P +  QG  ++   L E LC I+G D  +L P+AGA GE  G+++ RAYH +RGD  R   I+P SAHGTNPA+A M G ++V + +   G I++EEL    +   D ++ L++T P+T G++E+ I +I +   ++G  +Y DGAN+NA    T PG
Sbjct:   44 SELDIVRHYTNLAAKNYAVDVGFYPLGSCTMKYNPKINEKLASLEGFTMIHPCQPREVTQGALQLMYELKEMLCEISGMDDMTLIPSAGAHGELTGMLIARAYHLSRGDTKRKKAIVPDSAHGTNPASAMMAGFEVVELKSGKDGRIDLEELEKHLD---DEVAVLLLTNPNTLGLFEKDIIKIAETVHKHGALLYYDGANLNAILGRTRPG 252          
The following BLAST results are available for this feature:
BLAST of EY665021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSPB_SYNWW1.128e-3837.34Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_NITMU1.128e-3840.43Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_STAES1.474e-3840.57Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_STAEQ1.925e-3840.57Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_NITEU1.925e-3840.77Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THEAB3.283e-3836.67Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_BACLD3.283e-3840.09Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THEVO4.287e-3838.27Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_PROA29.551e-3840.16Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THEM41.629e-3738.68Probable glycine dehydrogenase [decarboxylating] s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665021 ID=EY665021; Name=EY665021; organism=Citrus sinensis; type=EST; length=770bp
TAGTTTTTTCTGGGGGCAAATCATTTCCATTCACTCGCTGCATCTCTGGC
TGAAGAGGTTGAGACTGCAATTCCGTCTGGATTAACAAGGGAGAGTCCGT
ATCTGACACATCCTGTTTTTAACAAATACCACACAGAGCATGAATTGCTT
AGATACATTCATCTGTTACAATCAAAGGAGCTCTCACTATGCCATAGTAT
GATTCCATTGGGATCTTGTACAATGAAATTGAATGCAACAACTGAAATGA
TGCCAGTGACATGGCCTAGCTTTGCTAACATACACCCTTTTGCCCCTGCT
GACCAGGCTCAGGGTTATCAGGAAATGTTTAACAATCTGGGTGAGTGGCT
GTGTACCATTACTGGCTTTGACTCTTTCTCTTTGCAACCAAATGCTGGTG
CAGCTGGTGAGTATGCTGGGCTCATGGTTATCCGCGCTTATCATAAGGCA
AGAGGAGACCATCACCGCAATGTGTGCATTATACCCGTGTCAGCCCATGG
GACAAATCCTGCTACTGCTGCCATGTGTGGAATGAAGATTGTTTCTGTTG
GAACTGATGCCAAGGGTAACATCAACATTGAAGAGTTAATGAATGCCGCA
GAAGCTAATATGGACAACCTATCAACCCTTATGGTAACGTACCCTTCAAC
TCATGGAGTTTATGAAAGAAGTATTGATGAGATATGCAAGATAAATTCAC
GATATGGAGGTCAAGTATATATGGACGGGGCTAACATGAATGCTCANGGT
CGTCTGACAAGCCCTGGTTA
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