CX043973

Overview
NameCX043973
Unique NameCX043973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043973 vs. ExPASy Swiss-Prot
Match: RISC_RAT (Retinoid-inducible serine carboxypeptidase OS=Rattus norvegicus GN=Scpep1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 55/143 (38.46%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  260 YVGVGESDEAQLF---YYFVKSEKNPKEDPLLLWLTGGPGCSAFS-GLAYEIGPVNFNTVEYNGSLPTLRLNPYS--WTKEASILFVDSPVGTGFSYARTPHASQTGDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSG 670
            YV V E  +A++F   YY     KN  E PL++WL GGPG S+   G   EIGP++             RL P +  W + AS+LFVD+PVGTGFSY  T  A           +   L+ +   H EF + PFY+  +SY G
Sbjct:   42 YVTVRE--DARMFWWLYYATNPCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLD------------TRLKPRNTTWLQWASLLFVDNPVGTGFSYVNTTDAYAKDLDTVASDMMVLLKSFFDCHKEFQTVPFYIFSESYGG 170          
BLAST of CX043973 vs. ExPASy Swiss-Prot
Match: RISC_HUMAN (Retinoid-inducible serine carboxypeptidase OS=Homo sapiens GN=SCPEP1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 47/125 (37.60%), Postives = 64/125 (51.20%), Query Frame = 2
Query:  299 YYFVKSEKNPKEDPLLLWLTGGPGCSAFS-GLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPHASQTGDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSG 670
            YY   S KN  E PL++WL GGPG S+   G   EIGP++ +          L+    +W + AS+LFVD+PVGTGFSY     A           +   L+ +   H EF + PFY+  +SY G
Sbjct:   56 YYATNSCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSD----------LKPRKTTWLQAASLLFVDNPVGTGFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGG 170          
BLAST of CX043973 vs. ExPASy Swiss-Prot
Match: RISC_MOUSE (Retinoid-inducible serine carboxypeptidase OS=Mus musculus GN=Scpep1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 47/125 (37.60%), Postives = 63/125 (50.40%), Query Frame = 2
Query:  299 YYFVKSEKNPKEDPLLLWLTGGPGCSAFS-GLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPHASQTGDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSG 670
            YY     KN  E PL++WL GGPG S+   G   EIGP++            L+    +W + AS+LFVD+PVGTGFSY  T  A           +   L+ +   H EF + PFY+  +SY G
Sbjct:   56 YYATNPCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDTQ----------LKPRNTTWLQWASLLFVDNPVGTGFSYVNTTDAYAKDLDTVASDMMVLLKSFFDCHKEFQTVPFYIFSESYGG 170          
BLAST of CX043973 vs. ExPASy Swiss-Prot
Match: SPCA_NANOT (Carboxypeptidase S1 homolog A OS=Nannizzia otae (strain CBS 113480) GN=SCPA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12
Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 2
Query:  203 TVKFLPGFQGPLPFELETGYVGVGESDEAQLFYYFVKSEKNPKEDPLLLWLTGGPGCSAFSGLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSY 532
            T + +  F G +         GV ++     F++F ++ ++PK  PL +WL GGPG S+  GL  E GP   N    N S  T   NPYSW  + ++L++D P   GFSY
Sbjct:   52 TTEGVRSFTGHVHLPPNNNDFGVNQNYSINTFFWFFEAREDPKNAPLSIWLNGGPGSSSMIGLFQENGPCMVN----NDSNSTTN-NPYSWNNKVNMLYIDQPNQVGFSY 156          
BLAST of CX043973 vs. ExPASy Swiss-Prot
Match: SCPB_TRIRU (Carboxypeptidase S1 homolog B OS=Trichophyton rubrum GN=SCPB PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  266 GVGESDEAQLFYYFVKSEKNPKEDPLLLWLTGGPGCSAFSGLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSY 532
            GV +      F++F ++ K+P+  PL +W+ GGPG S+  G+  E GP  F   + N +    RLNP+SW  E ++L++D PV  G SY
Sbjct:   75 GVEQDYPINTFFWFFEARKDPENAPLGIWMNGGPGSSSMFGMMTENGPC-FVNADSNST----RLNPHSWNNEVNMLYIDQPVQVGLSY 158          
BLAST of CX043973 vs. ExPASy Swiss-Prot
Match: SCPB_NANOT (Carboxypeptidase S1 homolog B OS=Nannizzia otae (strain CBS 113480) GN=SCPB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.385e-12
Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  263 VGVGESDEAQLFYYFVKSEKNPKEDPLLLWLTGGPGCSAFSGLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSY 532
            +GV +      F++F ++ K+P+  PL +W+ GGPG S+  G+  E GP   N         + RLNP+SW  E ++L++D PV  G SY
Sbjct:   74 LGVEQDYPINTFFWFFEARKDPENAPLSIWMNGGPGSSSMFGMMTENGPCFVNP-----DSNSTRLNPHSWNNEVNMLYLDQPVQVGLSY 158          
BLAST of CX043973 vs. ExPASy Swiss-Prot
Match: PEPF_ASPNG (Serine-type carboxypeptidase F OS=Aspergillus niger GN=pepF PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 47/152 (30.92%), Postives = 70/152 (46.05%), Query Frame = 2
Query:  245 ELETGYVGVGESDEAQLFYYFVKSEKNPKEDPLLLWLTGGPGCSAFSGLAYEIG-----PVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPHASQTGDFKQVHHLDQFLRKWLMDHPEFISN-PFYVGGDSYSGITVP 682
            E+ +G V + + + ++  ++  +       D + +WL GGPGCS+      E G     P  +  VE          NPYSW    ++L+VD PVGTGFS    P A  T + +      +F + W       I N   YV G+SY+G  VP
Sbjct:   82 EMYSGLVPIEKGNVSRSLFFVFQPTIGEPVDEITIWLNGGPGCSSLEAFLQENGRFVWQPGTYQPVE----------NPYSWVNLTNVLWVDQPVGTGFSLG-VPTA--TSEEEIAEDFVKFFKNWQQIFG--IKNFKIYVTGESYAGRYVP 218          
The following BLAST results are available for this feature:
BLAST of CX043973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RISC_RAT2.296e-1338.46Retinoid-inducible serine carboxypeptidase OS=Ratt... [more]
RISC_HUMAN3.916e-1337.60Retinoid-inducible serine carboxypeptidase OS=Homo... [more]
RISC_MOUSE8.723e-1337.60Retinoid-inducible serine carboxypeptidase OS=Mus ... [more]
SPCA_NANOT1.488e-1235.45Carboxypeptidase S1 homolog A OS=Nannizzia otae (s... [more]
SCPB_TRIRU5.654e-1238.20Carboxypeptidase S1 homolog B OS=Trichophyton rubr... [more]
SCPB_NANOT7.385e-1236.67Carboxypeptidase S1 homolog B OS=Nannizzia otae (s... [more]
PEPF_ASPNG8.165e-1130.92Serine-type carboxypeptidase F OS=Aspergillus nige... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14F01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14F01-L2-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043973 ID=CX043973; Name=CX043973; organism=Citrus sinensis; type=EST; length=688bp
CTTTGTCTTAGTTTCAACCCACCGTTTTAGATAATTAGGTTCTTATCCAA
CGAACCTGAAGATTGTTCACTAGCTCTTGTTTCTGCAAAGAAACTGTCAT
CTAGAGACTGGAAAAAGGCAAGGAACAATGGAAATGGCAAAGCTCTGTTT
TTCTCTTCTTCTGCTTTTACAGCTTTGCATGCAGCCTGCAGCTTCTCACT
CAACAGTCAAGTTTCTTCCAGGATTCCAGGGGCCTCTCCCCTTTGAACTT
GAAACTGGGTATGTAGGTGTAGGTGAGTCAGATGAAGCACAGCTCTTCTA
TTACTTTGTTAAGTCGGAGAAAAATCCAAAAGAGGACCCTCTCTTGCTTT
GGCTTACTGGTGGCCCTGGCTGCTCTGCCTTCTCAGGTCTTGCTTACGAA
ATTGGTCCAGTAAATTTCAACACAGTGGAGTACAATGGGAGCTTGCCCAC
TTTGCGCTTAAATCCCTACTCGTGGACAAAGGAAGCCAGCATCTTGTTTG
TGGATTCGCCTGTCGGCACTGGATTTTCCTACGCAAGAACCCCACATGCC
TCTCAAACTGGTGACTTTAAACAAGTTCACCACCTTGACCAATTTCTTAG
AAAGTGGCTGATGGATCACCCTGAGTTCATCTCAAATCCATTTTATGTTG
GAGGGGATTCGTACTCTGGCATTACGGTCCCGGCACTT
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