EY665012

Overview
NameEY665012
Unique NameEY665012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY665012 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.115e-11
Identity = 52/189 (27.51%), Postives = 84/189 (44.44%), Query Frame = 2 
Query:   50 VQALEHRPKLSVTEAEG------IPLIDLSALSATNTSIKNPDSTIRDLVV-EIGNACKNWGFFQVINHGVPTDKRRSIENMARKFFEQPLXXXXXXXXXXXXXXGYYDTEHTKNVRDWKEVFDFVVESPCLMPTSPDPEDKEIAETYNQWPDYPPEFREACEEYAKEVEKLAYKLMELIALSLGLPPD 595
            V  + H P ++V   +       IP IDL  +  +        + +R+ VV ++ +A + +GFFQ INHGVP D    + N  R+F +Q                 +Y  + TK ++        + ESP    +  D     +A    +  D P    E   EY+KEV KLA  + E+++ +LGL P+
Sbjct:   32 VPRIFHNPHVNVANPKPTSTVVMIPTIDLGGVFES--------TVVRESVVAKVKDAMEKFGFFQAINHGVPLDVMEKMINGIRRFHDQ----------DPEVRKMFYTRDKTKKLKYHSNA--DLYESPA--ASWRDTLSCVMAPDVPKAQDLPEVCGEIMLEYSKEVMKLAELMFEILSEALGLSPN 198

HSP 2 Score: 33.113 bits (74), Expect = 7.115e-11
Identity = 19/62 (30.65%), Postives = 29/62 (46.77%), Query Frame = 1 
Query:  646 YPPCPASHLALGVGRHKDAGALTVLAQNDVGVLR*KKIXGEW--VGSNPPDANYKCGDIFRM 825
            +PPCP  +   G  +H D   LT+L  ++ G L+     G W  V  NP    +  GD  ++
Sbjct:  216 FPPCPEPNRTFGGAQHTDRSFLTILLNDNNGGLQ-VLYDGYWIDVPPNPEALIFNVGDFLQL 276
The following BLAST results are available for this feature:
BLAST of EY665012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
GSL_ARATH7.115e-1127.51Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-A07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665012 ID=EY665012; Name=EY665012; organism=Citrus sinensis; type=EST; length=880bp
ATCAATTATCTGCAGCTGGCCAGCCATGGGAGACGTTGATGAAGCTTTCG
TTCAAGCCCTTGAGCACAGGCCTAAACTCTCCGTAACCGAAGCCGAAGGC
ATACCCTTAATTGATCTCTCAGCTTTGAGCGCCACCAACACCAGTATTAA
AAACCCTGACAGTACCATTCGTGACCTGGTTGTGGAAATAGGCAATGCAT
GCAAGAACTGGGGGTTTTTTCAGGTGATCAACCACGGCGTGCCCACGGAT
AAGCGCCGGAGCATAGAAAATATGGCGAGGAAGTTTTTCGAGCAGCCGTT
GGAGGAGAAGAGGAAGGTGAGGAGAGATGAGAAGAAGGTGGTGGGGTATT
ATGACACCGAGCATACCAAAAATGTTAGAGATTGGAAAGAAGTGTTTGAT
TTTGTCGTGGAGAGCCCTTGTTTGATGCCAACTTCACCTGATCCTGAGGA
CAAGGAAATAGCTGAGACGTACAATCAGTGGCCTGATTATCCTCCTGAAT
TCAGAGAGGCATGTGAAGAGTATGCTAAAGAAGTGGAAAAACTTGCTTAC
AAGTTGATGGAACTTATAGCCCTGAGTCTGGGACTCCCACCAGACAGTTT
CAATGGCTTCTTCAAGATCAAACCACCTTTGNTAGACTTAATCACTACCC
ACCGTGCCCAGCTTCCCACCTCGCCCTTGGNGTNGGCCGACACAAGGACG
CCGGTGCCCTTACCGTCCTTGCTCAGAATGATGTGGGAGTCTTGAGGTGA
AAAAAAATANACGGGGAGTGGGTCGGGTCAAACCCACCCGATGCTAATTA
TAAATGTGGTGACATATTCAGGATGGAGCATGATGCTTTGAAAGTGGGAC
CTAGGTTATGGTGAATCTGAAAGGAAGGTT
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