FC871830

Overview
NameFC871830
Unique NameFC871830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.744e-29
Identity = 59/104 (56.73%), Postives = 75/104 (72.12%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 313
            V  Q  A+ E++ +W NVV+AYEPVWAIGTG  ATP  AQ++HA +RK+L   +  + A+  RI+YGGS NG+N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  143 VERQLNAVLEEVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.584e-29
Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 313
            V  Q +A+ EK+ +W NVV+AYEPVWAIGTG  AT   AQ++H  +R++L + +S +VA S RI+YGGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  143 VQRQLQAVLEKVQDWTNVVVAYEPVWAIGTGLAATAEDAQDIHHSIREFLAEKLSRDVADSVRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.681e-29
Identity = 58/80 (72.50%), Postives = 69/80 (86.25%), Query Frame = 2
Query:   11 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 250
            QTKAIA+K+ +W NVV+AYEPVWAIGTGK ATP QAQEVHA LRKW  +NVSA+V+++ RI YGGSV  ANC+ELAA+PD
Sbjct:  127 QTKAIADKVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCRELAAKPD 206          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.681e-29
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = 2
Query:   17 KAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAT 319
            K + E    W  VV+AYEPVW+IGTG VATP QA+EVH  LRKW  + V AE A   RIIYGGS NG+NC++L   P++DGFLVGGASLKPEF+ +I   T
Sbjct:  153 KELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLKPEFMTMIDILT 253          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.043e-28
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 313
            V  Q   + EK+ +W NVV+AYEPVWAIGTG  AT   AQ++HA +R +L +  S +VA + RI++GGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  143 VKRQLTPVLEKVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHAAIRDFLAERTSRDVADAVRILFGGSANGANAASFRDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.034e-28
Identity = 62/104 (59.62%), Postives = 73/104 (70.19%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 313
            V  Q   +  KI +W NVV+AYEPVWAIGTG  AT   AQ++H E+R +LKD + A+ A   RIIYGGSVNG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  143 VRSQLDPVIAKIKDWSNVVIAYEPVWAIGTGLAATAEDAQQIHHEIRAYLKDKIGAQ-ADKVRIIYGGSVNGKNSGTFKDKSDVDGFLVGGASLKPEFVDIINS 245          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.176e-28
Identity = 63/111 (56.76%), Postives = 77/111 (69.37%), Query Frame = 2
Query:    2 VAEQTKAIAEKI-SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSATVKK 328
            ++EQ K  A      W  +V+AYEPVWAIGTG VATP +AQ+ H  +RKW+ + VS +VA  T I+YGGSVN  NC  L+ Q D+DGFLVGGASL   +FI IIKSA  KK
Sbjct:  146 LSEQLKDFASFTPEEWSKIVIAYEPVWAIGTGAVATPQEAQDTHVFIRKWISEKVSEDVAKKTSIMYGGSVNADNCHNLSKQSDIDGFLVGGASLVASDFIAIIKSAVPKK 256          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.828e-28
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 313
            V  Q  A+  ++ +W NVV+AYEPVWAIGTG  AT   AQ++H  +R +L + +  + A  TRI+YGGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  143 VERQLDAVIAEVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHHSIRSYLAEKLGKDTAEKTRILYGGSANGANAGTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.967e-27
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 2
Query:   11 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 250
            QTKAIA ++ +W NVV+AYEPVWAIGTGK ATP QAQEVHA LRKW  +NVSA+V+ + RI YGGSV  ANC+ELA +PD
Sbjct:  127 QTKAIAAQVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSNAIRIQYGGSVTAANCRELAGKPD 206          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.382e-27
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 313
            V  Q +A+ +K+ +W NVV+AYEPVWAIGTG  AT   AQ +H  +R++L   +S + A   RI+YGGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  143 VQRQLQAVLDKVQDWTNVVVAYEPVWAIGTGLAATSDDAQAIHHSIREFLAKKLSKDTAEKIRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
The following BLAST results are available for this feature:
BLAST of FC871830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_YEAST2.744e-2956.73Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_KLULA3.584e-2957.69Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]
TPIS_CULPI4.681e-2972.50Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPI1_GIALA4.681e-2960.40Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPIS_ASHGO1.043e-2856.73Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPIS_YARLI3.034e-2859.62Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]
TPIS_DICDI5.176e-2856.76Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPIS_CANGA8.828e-2854.81Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPIS_ANOME1.967e-2770.00Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPIS_KLUMA4.382e-2754.81Triosephosphate isomerase OS=Kluyveromyces marxian... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DC12FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871830 ID=FC871830; Name=FC871830; organism=Citrus sinensis; type=EST; length=577bp
TGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACA
ATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTT
GCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCT
TAAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGAT
GTGGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGA
TATTATCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAGCT
ACTCGGCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAACT
AGCGTTGTAATTTTTGTGGTCTGTTAAGTGTTACCAACGCCTTTCCAGTA
TAATAAGTTAAATCTTCAGAATTCTTAAGAATCTCTTTCCTATTTCAGTG
GGGATTTGAAACTTATCATTGTGGATTTAATAAATGGTTGCTTTTCCCTT
CTTGCAAAAAAAAAAAAAAAAAAAAAA
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