EY665001

Overview
NameEY665001
Unique NameEY665001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665001 vs. ExPASy Swiss-Prot
Match: RER1_SACPS (Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.792e-37
Identity = 76/176 (43.18%), Postives = 111/176 (63.07%), Query Frame = 1
Query:   40 DAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKG--SDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYT 561
            + AS+ A IAK  S    ++Q+YLD+ TPH  QRW        ++++R+   +G+Y++ Y              +PK D   +  +  +    G  S+EFRPFIRRLPEFKFWY   +A  ++ +++ FSIFD+PVFWPILL Y+++LF LTM+RQ+ HM+KYRYIP   GK+KY+
Sbjct:   10 NGASSNALIAKMNSA-KLLYQHYLDKVTPHAKQRWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRATVISLVLSLFSIFDIPVFWPILLMYFVLLFFLTMRRQIQHMMKYRYIPLDIGKKKYS 184          
BLAST of EY665001 vs. ExPASy Swiss-Prot
Match: RER1_YEAST (Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 8.449e-37
Identity = 72/169 (42.60%), Postives = 105/169 (62.13%), Query Frame = 1
Query:   61 PIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKG--SDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYT 561
            P+    +    ++Q+YLD+ TPH  +RW        ++++R+   +G+Y++ Y              +PK D   +  +  +    G  S+EFRPFIRRLPEFKFWY   +A  ++ L++ FSIFD+PVFWPILL Y+I+LF LTM+RQ+ HMIKYRYIP   GK+KY+
Sbjct:   16 PLITKMNTMKLLYQHYLDKVTPHAKERWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRATVISLLLSLFSIFDIPVFWPILLMYFILLFFLTMRRQIQHMIKYRYIPLDIGKKKYS 184          
BLAST of EY665001 vs. ExPASy Swiss-Prot
Match: RER1_SCHPO (Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.441e-36
Identity = 69/162 (42.59%), Postives = 101/162 (62.35%), Query Frame = 1
Query:   91 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEA------LDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKY 558
            R++++++DR+ P+   RW+      +++ +R+  V+G+YIV Y              +PK DP  E       ++   LPT   DEFRPFIRRLPEFKFWY+  +A   A + +FF IFDVPVFWPIL+ Y++VL     +RQ+ HM+KYRY+PF  GK+K+
Sbjct:   20 RLYRHWVDRTIPYTTYRWLTVSGLIALFFIRILLVRGWYIVCYTLAIYLLNLFLAFLTPKFDPSVEQAMKDEEIEEGVLPTSKDDEFRPFIRRLPEFKFWYSSMRATLFALVASFFRIFDVPVFWPILVVYYLVLSFFCFRRQIQHMLKYRYVPFDIGKKKF 181          
BLAST of EY665001 vs. ExPASy Swiss-Prot
Match: RER1_DICDI (Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.743e-34
Identity = 73/166 (43.98%), Postives = 101/166 (60.84%), Query Frame = 1
Query:   88 SRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG-FYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPT---KGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKKS 573
            +R +Q  ++++     QRW      + +Y+LRV    G +Y++TY              SPK DPE E   G SLPT   +  DE +PFIRRLPEF FW++I KA  ++   TF    D+PVFWPILL Y+I++F +TMK+Q+ HMIKY+YIPF+ GK+ YT   S
Sbjct:   23 ARKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSGGWYVITYALGIFLLTRFIAFLSPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLFWHSIFKALFISIFCTFIPFLDLPVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTVGKKTYTKNNS 188          
The following BLAST results are available for this feature:
BLAST of EY665001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1_SACPS3.792e-3743.18Protein RER1 OS=Saccharomyces pastorianus GN=RER1 ... [more]
RER1_YEAST8.449e-3742.60Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 P... [more]
RER1_SCHPO1.441e-3642.59Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 ... [more]
RER1_DICDI8.743e-3443.98Protein RER1 homolog OS=Dictyostelium discoideum G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-H08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665001 ID=EY665001; Name=EY665001; organism=Citrus sinensis; type=EST; length=793bp
GAATTTGTAAGCTTAAAAAACCATGGAAGACCAGGGGCTGATGCTGCTTC
TGCGGTGGCCCCCATTGCAAAGTGGAGAAGTGATTTCTCGAGGATGTTTC
AGTACTATCTGGATCGATCAACCCCGCATCCATTGCAGAGGTGGATTGGA
ACTCTTGCCGCTGCGTCGATTTACTTGTTGCGTGTTTACTGTGTTCAAGG
GTTTTACATTGTCACATATGGCTTAGGAATCTATATTCTGAATTTGTTGA
TTGGATTCCTATCGCCGAAGATTGATCCGGAGTTTGAAGCCTTGGATGGA
GCTTCATTGCCAACTAAAGGGTCTGATGAGTTTAGGCCATTCATTCGCCG
TCTTCCTGAGTTTAAGTTCTGGTATGCCATCACAAAGGCTTTCTGTGTGG
CTTTCCTTATGACTTTCTTTTCTATATTTGATGTTCCTGTCTTTTGGCCC
ATATTGCTGTGCTATTGGATTGTTCTGTTTGTCCTTACAATGAAGCGCCA
AATGATGCACATGATTAAGTATAGATATATTCCGTTCAGCTTTGGGAAGC
AGAAGTATACTGGGAAAAAGTCTGCTGCCAGTACCAGTGGCTCGCCAAGG
GACTAAAGTGAAGTGGTAGGCAAATATAGGATAACTGGAAACTCACAACC
TTCCTATACTTGCTCTTTTAGATTTTTTTTTTTTTTTTTGCCCCGTTTAT
GAATTGTTTAATTTCAGAAAGAAAACATGTTTCATGTCAAATACAAATGN
CAAGTTCAAGTGTNNNAAANNAAAANNNNAAAAAAAAAAAAAA
back to top