CX043376

Overview
NameCX043376
Unique NameCX043376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043376_ssr594 microsatellite CX043376_ssr594:594..605. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig539 contig Csv1_Contig539:8..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H32_TETBO (Histone H3.2 (Fragment) OS=Tetrahymena borealis PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.206e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = -1 
Query:  416 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 538
            MAR KQTARKSTG +APRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARAKQTARKSTGAEAPRKQLASKAARKSAPATGGIKKPHR 41
The following BLAST results are available for this feature:
BLAST of CX043376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H32_TETBO4.206e-1385.37Histone H3.2 (Fragment) OS=Tetrahymena borealis PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10F07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10F07-L14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043376 ID=CX043376; Name=CX043376; organism=Citrus sinensis; type=EST; length=622bp
TTATCTAACAAATATCAAATTCCAAATATTCTTCAATCCATCATATCATT
CTTTACATGTAAAAACCGGAATAAAGAAAAACTAGCAAACTAAATAGGAA
ACTGACGACTACATAAGGAATCACAAATTAAGCACGCTCGCCTCGGATTC
GCCTTGCCAGTTGAATACCCTTGGGCATAATGGTGACTCGCTTGGCATGG
ATAGCACAAAGGTTGGTGTCCTCGAACAGACCCACGAGATAAGCCTCTGC
CGCTTCCTGCAGCGCAAGAACCGCGTGGCTTTGGAACCTCAAATCTGTCT
TGAAATCTTGAGCAATTTCACGAACCAGCCGCTGAAAAGGCAGCTTGCGG
ATCAAAAGCTCAGTGCTCTTCTGATATTTGCGGATTTCACGGAGGGCGAC
AGTTCCTGGACGGTAACGATGAGGCTTCTTGACTCCACCAGTTGTTGGAG
CAGATTTTCTTGCAGCCTTTGTGGCGAGCTGCTTCCTCGGAGCCTTTCCT
CCAGTTGACTTGCGCGCGGTTTGCTTCGTACGGGCCATTACTCTTTAATC
ACCAAACACAAACTGCAAAATGCACAGATCTGAATGCAACTTCAAATAAA
TAAATAAAATGAAGACTTCATT
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