CX043376 | Citrus Genome Database

Overview


Name	CX043376
Unique Name	CX043376
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	622

Libraries


Library Name	Type
Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CX043376_ssr594	microsatellite	CX043376_ssr594:594..605.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig539	contig	Csv1_Contig539:8..628.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H31_RAT (Histone H3.1 OS=Rattus norvegicus PE=1 SV=3)

HSP 1 Score: 254.603 bits (649), Expect = 2.966e-67
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = -1

Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H31_MUSPA (Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3)

HSP 1 Score: 254.603 bits (649), Expect = 2.966e-67
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = -1

Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H31_MOUSE (Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 2.966e-67
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = -1

Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H31_HUMAN (Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 2.966e-67
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = -1

Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H31_BOVIN (Histone H3.1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 2.966e-67
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = -1

Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H3L3_ARATH (Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g75600 PE=2 SV=3)

HSP 1 Score: 254.218 bits (648), Expect = 3.873e-67
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = -1

Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKS GGKAPR  LATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK +QLARRIRGERA
Sbjct:    1 MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 136

[Close]

BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H32_WHEAT (Histone H3.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 3.873e-67
Identity = 131/136 (96.32%), Postives = 132/136 (97.06%), Query Frame = -1

Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H32_PEA (Histone H3.2 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 3.873e-67
Identity = 131/136 (96.32%), Postives = 132/136 (97.06%), Query Frame = -1

Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H32_ONOVI (Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 3.873e-67
Identity = 131/136 (96.32%), Postives = 132/136 (97.06%), Query Frame = -1

Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H32_MEDSA (Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 3.873e-67
Identity = 131/136 (96.32%), Postives = 132/136 (97.06%), Query Frame = -1

Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of CX043376 vs. ExPASy Swiss-Prot

BLAST of CX043376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211


Match Name	E-value	Identity	Description
H31_RAT	2.966e-67	95.59	Histone H3.1 OS=Rattus norvegicus PE=1 SV=3	[more]
H31_MUSPA	2.966e-67	95.59	Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3	[more]
H31_MOUSE	2.966e-67	95.59	Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2	[more]
H31_HUMAN	2.966e-67	95.59	Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2	[more]
H31_BOVIN	2.966e-67	95.59	Histone H3.1 OS=Bos taurus PE=1 SV=2	[more]
H3L3_ARATH	3.873e-67	95.59	Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g7...	[more]
H32_WHEAT	3.873e-67	96.32	Histone H3.2 OS=Triticum aestivum PE=1 SV=2	[more]
H32_PEA	3.873e-67	96.32	Histone H3.2 OS=Pisum sativum PE=1 SV=2	[more]
H32_ONOVI	3.873e-67	96.32	Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2	[more]
H32_MEDSA	3.873e-67	96.32	Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS07_10F07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10F07-L14-1-6.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX043376 ID=CX043376; Name=CX043376; organism=Citrus sinensis; type=EST; length=622bp
TTATCTAACAAATATCAAATTCCAAATATTCTTCAATCCATCATATCATT
CTTTACATGTAAAAACCGGAATAAAGAAAAACTAGCAAACTAAATAGGAA
ACTGACGACTACATAAGGAATCACAAATTAAGCACGCTCGCCTCGGATTC
GCCTTGCCAGTTGAATACCCTTGGGCATAATGGTGACTCGCTTGGCATGG
ATAGCACAAAGGTTGGTGTCCTCGAACAGACCCACGAGATAAGCCTCTGC
CGCTTCCTGCAGCGCAAGAACCGCGTGGCTTTGGAACCTCAAATCTGTCT
TGAAATCTTGAGCAATTTCACGAACCAGCCGCTGAAAAGGCAGCTTGCGG
ATCAAAAGCTCAGTGCTCTTCTGATATTTGCGGATTTCACGGAGGGCGAC
AGTTCCTGGACGGTAACGATGAGGCTTCTTGACTCCACCAGTTGTTGGAG
CAGATTTTCTTGCAGCCTTTGTGGCGAGCTGCTTCCTCGGAGCCTTTCCT
CCAGTTGACTTGCGCGCGGTTTGCTTCGTACGGGCCATTACTCTTTAATC
ACCAAACACAAACTGCAAAATGCACAGATCTGAATGCAACTTCAAATAAA
TAAATAAAATGAAGACTTCATT