EY664967

Overview
NameEY664967
Unique NameEY664967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS3_PIG (40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.573e-26
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 279
            V+V GKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:  136 VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEI 217          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS3_HUMAN (40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 3.573e-26
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 279
            V+V GKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:  136 VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEI 217          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS3_BOVIN (40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.573e-26
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 279
            V+V GKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:  136 VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEI 217          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS3_DROME (40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.358e-25
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 318
            V+V GKLR QRAKSMKF DG MI SG P N+Y+++A RHVLLRQGVLGIKVK+ML +D K K GP  PLPD V+ + P +E++Y  P T   I  P
Sbjct:  138 VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPP 233          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS3_MANSE (40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.951e-25
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 306
            V+V GKLR QRAKSMKF DG MI SG P N+Y+++A RHVLLRQGVLGIKVKIML WDQ+GK GP  P PD + +   K+E   AP   TS
Sbjct:  137 VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE--PAPLEPTS 225          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS3_CAEEL (40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.307e-23
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 279
            VIV GKLR QRAK+MKF DG MI SG PVN+YI  AVRHV LRQGV+GIKVKIML +D +G+ GP   LPD V I   +EEV
Sbjct:  138 VIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEV 219          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS3_YEAST (40S ribosomal protein S3 OS=Saccharomyces cerevisiae GN=RPS3 PE=1 SV=5)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPA 294
            V+V GKLRA RAK+MKF DG++I SGQPVN++ID+A RHVL+RQGVLGIKVKIM +   K + GP   LPD VT I P +EE  +AP+
Sbjct:  136 VVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEEEPILAPS 221          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS3_DICDI (40S ribosomal protein S3 OS=Dictyostelium discoideum GN=rps3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.480e-19
Identity = 50/77 (64.94%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGK--QGPTTPLPDLVTI 258
            VIV GKLRAQRAKSMKF+DGYMI SGQP  ++ID A RHVLLRQG LG+KV IML +D+  K       P PD+V I
Sbjct:  139 VIVSGKLRAQRAKSMKFRDGYMIKSGQPSKDFIDFACRHVLLRQGTLGVKVAIMLPYDETRKIHGACNIPQPDVVVI 215          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS3_SCHPO (40S ribosomal protein S3 OS=Schizosaccharomyces pombe GN=rps3 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.239e-19
Identity = 53/89 (59.55%), Postives = 65/89 (73.03%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 297
            V++ GKLRA RAKSMKF DG+MI SGQP  ++IDSA RHVLLRQGVLG+KVKIML  + K +Q  +  LPD+V +  P +EE    P T
Sbjct:  138 VVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP-EPKTRQKKS--LPDIVVVLDPKEEEPITKPYT 223          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS3_ENCCU (40S ribosomal protein S3 OS=Encephalitozoon cuniculi GN=RPS3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.378e-16
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 258
            +IV GKL+ QRAKS+KF+DG +I SG  V +YI++    V  +QGV+GI+V+IML +D +G  GP  PLPD +TI
Sbjct:  147 IIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIMLPYDPEGVLGPNYPLPDRITI 221          
The following BLAST results are available for this feature:
BLAST of EY664967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RS3_PIG3.573e-2671.9540S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=... [more]
RS3_HUMAN3.573e-2671.9540S ribosomal protein S3 OS=Homo sapiens GN=RPS3 P... [more]
RS3_BOVIN3.573e-2671.9540S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=... [more]
RS3_DROME1.358e-2560.4240S ribosomal protein S3 OS=Drosophila melanogaste... [more]
RS3_MANSE3.951e-2563.7440S ribosomal protein S3 OS=Manduca sexta GN=RpS3 ... [more]
RS3_CAEEL6.307e-2367.0740S ribosomal protein S3 OS=Caenorhabditis elegans... [more]
RS3_YEAST3.461e-2162.5040S ribosomal protein S3 OS=Saccharomyces cerevisi... [more]
RS3_DICDI2.480e-1964.9440S ribosomal protein S3 OS=Dictyostelium discoide... [more]
RS3_SCHPO3.239e-1959.5540S ribosomal protein S3 OS=Schizosaccharomyces po... [more]
RS3_ENCCU4.378e-1653.3340S ribosomal protein S3 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664967 ID=EY664967; Name=EY664967; organism=Citrus sinensis; type=EST; length=457bp
CGGTCCGNATTCCAAGCCCGACCCACGCGTCCGGTTATTGTTTTTGGAAA
GCTCCGGGCTCAACGTGCCAAGTCCATGAAATTTAAAGATGGGTACATGA
TATCCTCAGGTCAACCTGTGAATGAATACATCGACTCAGCTGTAAGACAT
GTTCTTCTTAGACAGGGTGTGCTTGGTATCAAGGTGAAGATCATGCTTGA
ATGGGATCAAAAGGGCAAGCAAGGGCCAACAACACCTTTGCCTGATCTGG
TTACCATCCACCCTCTGAAGGAAGAAGTGTATGTTGCACCAGCGACGGCA
ACCAGTATTGAGCTTCCAGTAGCATAAACCGTGAGTTGAGTTGTGTCCAA
TGTCTGATGTAATGATTTAGTAATAGCTTTATGTTTTCTTTTTTCTTTTA
ATTATCTATGGAGGAGCAAGAGAATACTACTGGGTACTGTGCAAAAAAAA
AAAAAAA
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