EY664931

Overview
NameEY664931
Unique NameEY664931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5994 contig Csv1_Contig5994:206..972. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664931 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.376e-20
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   52 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILHDKWSSAYDCRTILLSIQSLLGEPNPESPL 351
            G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD+ G ICLDIL DKWS A   RT+LLSIQ+LL  PNP+ PL
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
BLAST of EY664931 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.376e-20
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   52 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILHDKWSSAYDCRTILLSIQSLLGEPNPESPL 351
            G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD+ G ICLDIL DKWS A   RT+LLSIQ+LL  PNP+ PL
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
BLAST of EY664931 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.376e-20
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   52 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILHDKWSSAYDCRTILLSIQSLLGEPNPESPL 351
            G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD+ G ICLDIL DKWS A   RT+LLSIQ+LL  PNP+ PL
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
BLAST of EY664931 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.797e-20
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   52 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILHDKWSSAYDCRTILLSIQSLLGEPNPESPL 351
            G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD+ G ICLDIL DKWS A   RT+LLSIQ+LL  PNP+ PL
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
BLAST of EY664931 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.797e-20
Identity = 59/152 (38.82%), Postives = 83/152 (54.61%), Query Frame = 1
Query:    1 QRLY*ELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILH-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQK 411
            +RL  E   L  +G D G++A P  E   FTW   I+G  GT +EG  Y  +L+FP DYP  PP +KFE   FHPNV + G +C+ ILH             ++WS       ILLS+ S+L EPN ES  N  A  +   ++E+Y ++V++
Sbjct:    8 RRLMKEYKELTENGPD-GITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRR 158          
BLAST of EY664931 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.797e-20
Identity = 50/114 (43.86%), Postives = 69/114 (60.53%), Query Frame = 1
Query:   58 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILHDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRK 399
            SA P G+ ++ W  +I G   + Y G  + LS+ FP DYP KPP++   T  +HPN++  GNICLDIL D+WS A     +LLSI SLL + NP+ PL    A +   K+D +K
Sbjct:   22 SAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIY--KQDRKK 133          
BLAST of EY664931 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.347e-20
Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 1
Query:   52 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILHDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKE 387
            G++A P  +++  +  TIEG + + YE   ++L L  P DYP + P+V+F T  +HPN+D+ G ICLD+L   WS A   RT+LLSIQ+LL  PNP  PL N  A   + N++
Sbjct:   22 GITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQ 134          
BLAST of EY664931 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.065e-20
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   52 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILHDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 387
            G+ A P  +++  +  T+EG + + YEG  + L L  P +YP  PP V+F T  +HPNVD+ G ICL  L   WS A   RT+LLSIQ+L+G PNP+ PL++  A +    E
Sbjct:   21 GIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENE 132          
BLAST of EY664931 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.918e-20
Identity = 52/136 (38.24%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    4 RLY*ELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV-DQYGNICLDILHDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQ 408
            R+  EL     +    G+   P+ +++    GTI G  GT YEG ++++ +  P  YPF+PP+++F T  +HPN+  Q G ICLDIL D+WS A   +T L+SIQ+LL  P P+ P ++  A      E Y K  Q
Sbjct:    6 RIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVA------EQYMKNYQ 135          
BLAST of EY664931 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.521e-19
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   58 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILHDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 417
            SA P+G++++ WI TI G  GT YEG  + L + FP DYPFKPP++ F+T  +H NVD  G++ ++IL D WS A     +L +I+S+  +P P SP     A L     +    V K++
Sbjct:   57 SAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEW 176          
The following BLAST results are available for this feature:
BLAST of EY664931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBE2N_MOUSE1.376e-2048.00Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN1.376e-2048.00Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN1.376e-2048.00Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2N_MACFA1.797e-2048.00Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBC7_SCHPO1.797e-2038.82Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC4_CANAL1.797e-2043.86Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC13_YEAST2.347e-2043.36Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC13_SCHPO3.065e-2042.86Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC27_ARATH8.918e-2038.24Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
COP10_ARATH1.521e-1940.00Constitutive photomorphogenesis protein 10 OS=Arab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-B01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664931 ID=EY664931; Name=EY664931; organism=Citrus sinensis; type=EST; length=767bp
CAAAGGCTTTATTAAGAATTGATGTCTCTTATGATGAGTGGAGGTGATCT
TGGGGTCTCGGCCTTTCCTGAAGGCGAGAGCATTTTCACTTGGATTGGCA
CAATCGAGGGTGGAAAGGGAACTATGTATGAGGGTTTATCATACAAACTT
TCTTTGCGTTTTCCTCTGGATTATCCTTTCAAGCCACCCCAAGTCAAGTT
TGAAACTATGTGCTTCCATCCAAATGTTGATCAGTATGGCAACATATGCC
TAGACATCCTTCATGACAAGTGGTCTTCAGCGTATGATTGCAGAACGATT
CTTTTGTCCATTCAAAGTTTACTGGGAGAGCCTAATCCAGAGAGCCCTCT
CAACAGCTATGCTGCAGCTCTGTTGAACAATAAGGAAGATTACAGAAAAA
TGGTCCAGAAACAGTACTTTGCTGGAGAATTTGAGAGCTAATTTGAACAG
CAAAACAGATACAAAATCGGATGTTAGGCTTCCACATTATTTCTCTGTAA
AGCTCAAGGGGAAGGGCTTGTTTCAGTTTGGAACTTGTTTCAATGAAAAC
TGATCTACATAAGTCTCATCATTGTCAGTACAGNTATTTACATTATACCC
AAAGGAATGGTACTCANGCTCTCGATAATTTCTCATTGTATAGCAAAAAT
AAAGTTACACCGTGTTGTAATTTTGTTTNGATCAAATGAAAGGNACTNCT
TTCTCATATGCAATTGGAGTGATACACTTCTGTTGGNTCNTATAAAAAAA
TNNAANATAAATAAAAA
back to top