EY664927

Overview
NameEY664927
Unique NameEY664927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664927_ssr396 microsatellite EY664927_ssr396:396..407. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8839 contig Csv1_Contig8839:222..912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664927 vs. ExPASy Swiss-Prot
Match: BIP3_MAIZE (Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.683e-48
Identity = 92/118 (77.97%), Postives = 105/118 (88.98%), Query Frame = 3
Query:   36 KGRLCQRDLERMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDNVFLADKLESDEKDKIETAVKEALEWLDDNHSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 389
            KGRL Q +++RMVREAEEFAEEDKKVKE+IDARN LETYVYNMKN + D   LADKLE++EK+K+E A+KEALEWLDDN SAEKEDYEEKLKEVEAVCNPI++AVYQRSGGAPG   +
Sbjct:  536 KGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVYQRSGGAPGGDAD 653          
BLAST of EY664927 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 1.683e-48
Identity = 92/118 (77.97%), Postives = 105/118 (88.98%), Query Frame = 3
Query:   36 KGRLCQRDLERMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDNVFLADKLESDEKDKIETAVKEALEWLDDNHSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 389
            KGRL Q +++RMVREAEEFAEEDKKVKE+IDARN LETYVYNMKN + D   LADKLE++EK+K+E A+KEALEWLDDN SAEKEDYEEKLKEVEAVCNPI++AVYQRSGGAPG   +
Sbjct:  536 KGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVYQRSGGAPGGDAD 653          
BLAST of EY664927 vs. ExPASy Swiss-Prot
Match: HSP7C_DROME (Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.984e-29
Identity = 54/113 (47.79%), Postives = 88/113 (77.88%), Query Frame = 3
Query:   36 KGRLCQRDLERMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDNVFLADKLESDEKDKIETAVKEALEWLDDNHSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAP 374
            + RL   D++RM+R+AE+FA+EDKK+KE++++RN LE+Y Y++KNQI D   L  KL  DEK+K+E+A+ E+++WL+ N  A+ E+Y+++ K++EA+  P+I  +YQ +GGAP
Sbjct:  530 QNRLTPEDIDRMIRDAEKFADEDKKLKERVESRNELESYAYSLKNQIGDKDKLGAKLSDDEKNKLESAIDESIKWLEQNPDADPEEYKKQKKDLEAIVQPVIAKLYQGAGGAP 642          
BLAST of EY664927 vs. ExPASy Swiss-Prot
Match: GRP78_APLCA (78 kDa glucose-regulated protein OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.984e-29
Identity = 58/113 (51.33%), Postives = 83/113 (73.45%), Query Frame = 3
Query:   36 KGRLCQRDLERMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDNVFLADKLESDEKDKIETAVKEALEWLDDNHSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAP 374
            + RL   D+ERM+ +AE++A+EDKKVKEK+DA+N LE+Y Y++KNQI D   L  KL  ++K+KI  AV EA++WL+ N  AE E + EK  E+E +  PI+T +Y++SGGAP
Sbjct:  539 QNRLSPEDIERMINDAEKYADEDKKVKEKVDAKNELESYAYSLKNQIGDKEKLGAKLSDEDKEKITEAVDEAIKWLESNAEAESEAFNEKKTELEGIVQPIMTKLYEQSGGAP 651          
BLAST of EY664927 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.683e-29
Identity = 56/114 (49.12%), Postives = 86/114 (75.44%), Query Frame = 3
Query:   36 KGRLCQRDLERMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDNVFLADKLESDEKDKIETAVKEALEWLDDNHSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 377
            KGRL + ++E+MV+EAE++  ED+++K+K++A+NSLE Y YNM+N + D   +  KL SD+K KIE AV +A+ WL+ N  AE +++E+K+KE+E +CNPII  +YQ +GG  G
Sbjct:  515 KGRLSKEEIEKMVQEAEKYKAEDEELKKKVEAKNSLENYAYNMRNTVKDEK-IGSKLSSDDKKKIEDAVDQAISWLESNQLAEVDEFEDKMKELEGICNPIIAKMYQGAGGDAG 627          
BLAST of EY664927 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.134e-28
Identity = 55/111 (49.55%), Postives = 88/111 (79.28%), Query Frame = 3
Query:   36 KGRLCQRDLERMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDNVFLADKLESDEKDKIETAVKEALEWLDDNHSAEKEDYEEKLKEVEAVCNPIITAVYQRSGG 368
            KGRL + ++E+MV+EAE++  ED++ K+K++A+N+LE Y YNM+N I D   +A KL +D++ KIE A+++A++WLD N  AE E++E+K+KE+E++CNPII  +YQ +GG
Sbjct:  513 KGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDEK-IASKLSADDRTKIEDAIEQAIQWLDGNQLAEAEEFEDKMKELESLCNPIIAKMYQGAGG 622          
BLAST of EY664927 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.934e-28
Identity = 58/115 (50.43%), Postives = 85/115 (73.91%), Query Frame = 3
Query:   36 KGRLCQRDLERMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDNVFLADKLESDEKDKIETAVKEALEWLDDNHSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGA 380
            KGRL + ++E+MV+EAE++  ED++VK+K+DA+N+LE Y YNM+N I D+  +A KL +++K KIE AV  A+ WLD N  AE E++E+K+KE+E +CNPII  +Y   G   GA
Sbjct:  509 KGRLSKEEIEKMVQEAEKYKAEDEEVKKKVDAKNALENYAYNMRNTIKDDK-IASKLPAEDKKKIEDAVDGAISWLDSNQLAEVEEFEDKMKELEGICNPIIAKMYXGEGAGMGA 622          
BLAST of EY664927 vs. ExPASy Swiss-Prot
Match: BIP2_DICDI (Luminal-binding protein 2 OS=Dictyostelium discoideum GN=bip2 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 58/119 (48.74%), Postives = 87/119 (73.11%), Query Frame = 3
Query:   36 KGRLCQRDLERMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDNVFLADKLESDEKDKIETAVKEALEWLDDNHSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAP-GAGTE 389
            K RL Q D++RMV+EA + A+EDK  KE+++A+N+LE Y+Y +KN I D   +  K+ESD+K+ IETA+ +AL WLD N SAEKE+++E+ K +E +  PI + +Y  +GG+P GAG +
Sbjct:  533 KERLSQADIDRMVKEAADAADEDKAAKERVEAKNTLENYIYQIKNTIGDKDKIGGKIESDDKETIETAISDALSWLDVNSSAEKEEFDEQYKILEKIVQPIFSKLYGAAGGSPNGAGED 651          
BLAST of EY664927 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28
Identity = 56/114 (49.12%), Postives = 84/114 (73.68%), Query Frame = 3
Query:   36 KGRLCQRDLERMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDNVFLADKLESDEKDKIETAVKEALEWLDDNHSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 377
            KGRL + ++E+MV++AE +  ED++VK+K++A+NSLE Y YNM+N I D   +  KL  DEK KIE AV++A++WL+ N  AE +++E+K KE+E +CNPII  +YQ + G  G
Sbjct:  512 KGRLSKEEIEKMVKDAERYKAEDEEVKKKVEAKNSLENYAYNMRNTIKDEK-IGGKLSPDEKQKIEKAVEDAIQWLEGNQMAEVDEFEDKQKELEGICNPIIAKMYQGAAGPGG 624          
BLAST of EY664927 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28
Identity = 57/115 (49.57%), Postives = 87/115 (75.65%), Query Frame = 3
Query:   39 GRLCQRDLERMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDNVFLADKLESDEKDKIETAVKEALEWLDDNHSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAG 383
            GRL + ++E++V+EAE++  ED++VK+K++A+N+LE Y YNM+N I D+  +  KL++ +K+KIETAV EA+EWL+ N  AE ++ E+KLKE+E +CNPII  +YQ  G  P  G
Sbjct:  516 GRLSKDEIEKLVKEAEKYKAEDEEVKKKVEAKNALENYAYNMRNTIKDDK-IPGKLDAGDKEKIETAVNEAIEWLEKNQLAEVDELEDKLKELEGLCNPIIARLYQGRGDVPIGG 629          
The following BLAST results are available for this feature:
BLAST of EY664927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
BIP3_MAIZE1.683e-4877.97Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=... [more]
BIP2_MAIZE1.683e-4877.97Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
HSP7C_DROME2.984e-2947.79Heat shock 70 kDa protein cognate 3 OS=Drosophila ... [more]
GRP78_APLCA2.984e-2951.3378 kDa glucose-regulated protein OS=Aplysia califo... [more]
HSP71_SOLLC8.683e-2949.12Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP72_SOLLC1.134e-2849.55Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP70_MAIZE1.934e-2850.43Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
BIP2_DICDI4.309e-2848.74Luminal-binding protein 2 OS=Dictyostelium discoid... [more]
HSP70_SOYBN5.628e-2849.12Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP70_DAUCA5.628e-2849.57Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-A06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664927 ID=EY664927; Name=EY664927; organism=Citrus sinensis; type=EST; length=691bp
AATTCACGGCCCGACCCACGCGTCCGCACAAAGCTAAGGGTCGCCTGTGC
CAGAGAGACCTTGAGCGTATGGTTCGTGAGGCTGAAGAATTTGCCGAGGA
GGACAAGAAAGTAAAGGAGAAGATCGATGCTCGCAACAGCCTTGAGACCT
ATGTCTATAACATGAAAAACCAGATTAATGACAATGTTTTTCTTGCCGAC
AAGCTCGAATCTGATGAGAAGGACAAGATTGAAACTGCTGTAAAGGAAGC
CCTTGAATGGCTCGATGACAACCACAGCGCAGAGAAAGAGGACTATGAAG
AGAAGCTCAAGGAGGTTGAAGCCGTTTGCAACCCCATCATCACTGCTGTA
TATCAGAGATCTGGCGGAGCCCCCGGTGCTGGCACTGAATCATCGGATGA
TGATGATTCACACGATGAGCTCTAAAGAATTTTTACTTCGATTGACCATA
TTGCCAAAACTGTCAAGAGGCTAAAATTGAGTAAAATAGGCTTTTTAGAT
TATCTGAGGGTACTTACTGTAATTTTTCTCGTGGTAGGAGAAGTAAAAGG
GAGGCGGAATTTCCCTTTCTTCGCGTGTTTTTTTGGATGTGAAGATACTT
TAAAGGATCTTTTCTTATTTCATTACTAGTGTTTCCTTCAATATTAATGA
AACGTCTCCAAAGTCATTATTATAAAAAAAAAAAAAAAAAA
back to top