EY664917

Overview
NameEY664917
Unique NameEY664917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664917 vs. ExPASy Swiss-Prot
Match: GLPF_ECOLI (Glycerol uptake facilitator protein OS=Escherichia coli (strain K12) GN=glpF PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.402e-11
Identity = 58/208 (27.88%), Postives = 93/208 (44.71%), Query Frame = 1
Query:   13 VYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKA--------FQKSYYTRYGGGAN-ELADGYST--------GVGLAAEIIGTFVLVYTVFSATDPNRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQW------------LFWV---GPFIGAAIAAFYHQFIL 540
            +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA     LV          F+++++   G   + +LA  +ST            A E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  V      AW   W             F V   GP +GA + AF ++ ++
Sbjct:   56 IYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLI 255          
BLAST of EY664917 vs. ExPASy Swiss-Prot
Match: GLPF_ECOL6 (Glycerol uptake facilitator protein OS=Escherichia coli O6 GN=glpF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.402e-11
Identity = 58/208 (27.88%), Postives = 93/208 (44.71%), Query Frame = 1
Query:   13 VYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKA--------FQKSYYTRYGGGAN-ELADGYST--------GVGLAAEIIGTFVLVYTVFSATDPNRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQW------------LFWV---GPFIGAAIAAFYHQFIL 540
            +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA     LV          F+++++   G   + +LA  +ST            A E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  V      AW   W             F V   GP +GA + AF ++ ++
Sbjct:   56 IYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLI 255          
BLAST of EY664917 vs. ExPASy Swiss-Prot
Match: GLPF_ECO57 (Glycerol uptake facilitator protein OS=Escherichia coli O157:H7 GN=glpF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.402e-11
Identity = 58/208 (27.88%), Postives = 93/208 (44.71%), Query Frame = 1
Query:   13 VYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKA--------FQKSYYTRYGGGAN-ELADGYST--------GVGLAAEIIGTFVLVYTVFSATDPNRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQW------------LFWV---GPFIGAAIAAFYHQFIL 540
            +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA     LV          F+++++   G   + +LA  +ST            A E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  V      AW   W             F V   GP +GA + AF ++ ++
Sbjct:   56 IYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLI 255          
BLAST of EY664917 vs. ExPASy Swiss-Prot
Match: NIP31_ARATH (Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.579e-11
Identity = 55/175 (31.43%), Postives = 80/175 (45.71%), Query Frame = 1
Query:    7 VRVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLG---AISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPNRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAF 522
            V +Y    +SG H NPAV+     ++K    +   Y+ AQ LG   A + + LV        +  G          S       E I TF L++ V SA   ++ A  S     A + IG  + +  L + PI+G  +NPARSLG A+I+     + D WL+ V P IGA   A+
Sbjct:   88 VMIYSIGHVSGAHFNPAVSIAFASSKKFPFNQVPGYIAAQLLGSTLAAAVLRLVFHLDDDVCSLKGDVYVGTYPSNSNTTSFVMEFIATFNLMF-VISAVATDKRATGS----FAGIAIGATIVLDILFSGPISGASMNPARSLGPALIWG---CYKDLWLYIVSPVIGALSGAW 254          
BLAST of EY664917 vs. ExPASy Swiss-Prot
Match: NIP21_MAIZE (Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.579e-11
Identity = 51/182 (28.02%), Postives = 82/182 (45.05%), Query Frame = 1
Query:    7 VRVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG-----LAAEIIGTFVLVYTVFSATDPNRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 537
            V +Y    ISG H+NPAVT    + R    ++   Y  AQ  G+I    ++KA                  G +T  G     L  EII TF +++   +     R+     V  LA L +G AV +  +    ++G  +NPAR+LG A+  N    +   W++++GP +G    A+ + +I
Sbjct:   92 VMIYAVGHISGAHMNPAVTLAFAVFRHFPWIQVPFYWAAQFTGSICASFVLKAVLHPIAVL----------GTTTPTGPHWHSLVIEIIVTFNMMFVTLAVATDTRA-----VGELAGLAVGSAVCITSIFAGAVSGGSMNPARTLGPALASN---LYTGLWIYFLGPVLGTLSGAWTYTYI 255          
BLAST of EY664917 vs. ExPASy Swiss-Prot
Match: GLPF_STRCO (Probable glycerol uptake facilitator protein OS=Streptomyces coelicolor GN=glpF PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.579e-11
Identity = 63/207 (30.43%), Postives = 89/207 (43.00%), Query Frame = 1
Query:   16 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRY----------GG----------------GANELADGYSTGV-------GLAAEIIGTFVLVYTVFSATDPNRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIY------NKDKA-WDDQWLFWVGPFIGAAIA 516
            Y +  +SG H+NPAVT G+ + +         Y   Q LGA+ G  LV     +YY ++          GG                GA  +   +STG         LA EIIGTFVL+  + +      +   + + +L  L  GF V  + L+    TG  INP R LG  +++      NK  + W   W+  VGP IG AIA
Sbjct:   56 YISGPLSGAHLNPAVTVGIAI-KDGDWSNTPTYFAGQLLGAMIGAVLVWV---AYYGQFQAHLTDREIVGGPGAQDTTAKSVEAQEKGAGPVLGVFSTGPEIRHTVQNLATEIIGTFVLLLAILTQ---GLNDEGNGLGILGALITGFVVVSIGLSLGGPTGYAINPVRDLGPRIVHALLPLPNKGGSDWSYAWIPVVGPLIGGAIA 255          
The following BLAST results are available for this feature:
BLAST of EY664917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
GLPF_ECOLI3.402e-1127.88Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECOL63.402e-1127.88Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECO573.402e-1127.88Glycerol uptake facilitator protein OS=Escherichia... [more]
NIP31_ARATH7.579e-1131.43Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1... [more]
NIP21_MAIZE7.579e-1128.02Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2[more]
GLPF_STRCO7.579e-1130.43Probable glycerol uptake facilitator protein OS=St... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-H08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664917 ID=EY664917; Name=EY664917; organism=Citrus sinensis; type=EST; length=907bp
CCACGCGTCCGCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAA
CCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCC
GTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGTGTT
GGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGG
GGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCGCCG
AGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCACTGAT
CCCAATAGAAGCGCCAGAGACTCCCATGTCCCCGTTTTGGCACCGCTCCC
CATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAATCACTG
GCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTTACAAC
AAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTCAT
CGGTGCAGCAATTGCGGCTTTCTACCACCAATTCATCTTGAGAGCTGGAG
CTGTCAAGGCTCTTGGTTCATTCANGAGCCAATCCCGTGTCTGATTTTAG
TTTCGACAAGTGGATTATCCACATCTTCATGGGGTTAATGATTTAAAATT
GGAAAGAAAAAAACTGGGAAGGAGTAGAGGTGTGTTAAGTTTCAAAAAGT
GATAATGAGGGGGGGTGTTGATTTGTGCTTTCAAAGAGNTGTANGCAAAA
AGTCTCTTAAACAATGAGGGGGCTTTGCTTTTTGTAATCCCCTCTGTTGT
TTTCAGCACTTTCCTTANAATCACTTCTTCATGGTTCTGNCTCTTCTACT
TGNATTATTTCTCCGNATGGATATATTATTATTTGTGGCTTTAGAAAAAA
AAAAAAA
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