EY661014

Overview
NameEY661014
Unique NameEY661014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661014 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 30/90 (33.33%), Postives = 60/90 (66.67%), Query Frame = 1
Query:  271 VVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVP 540
            + + + ++  V++++  V+V+ +A WCGPC+ IAP +E+ A+ Y    + ++++ D+   +A + GIR++PT L FK+G+K   ++GA P
Sbjct:   10 ITSKAEFQEKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYT-DASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANP 98          
BLAST of EY661014 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 31/88 (35.23%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  310 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 573
            S   ++++F A WC PCRMIAP   +LAK++      FK++ D+  N+A ++G+ ++PT +  K+G   + ++GA  K  L +T+ K+
Sbjct:   27 SNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGA-RKEDLHATIAKH 113          
BLAST of EY661014 vs. ExPASy Swiss-Prot
Match: THIO_BORBU (Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 28/98 (28.57%), Postives = 57/98 (58.16%), Query Frame = 1
Query:  280 DSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 573
            D  W       + P +++F+A WCGPC+M++P  E+L+K+Y   +  +K++TD   +I++  G++S+PT+LF     K +  +G + +    + +  +
Sbjct:   20 DKEWS---FRGDRPAIIDFYANWCGPCKMLSPIFEKLSKKYENSIDFYKVDTDKEQDISSAIGVQSLPTILFIPVDGKPKVSVGFLQEDAFENIIKDF 114          
BLAST of EY661014 vs. ExPASy Swiss-Prot
Match: THIO3_CORNE (Thioredoxin C-3 OS=Corynebacterium nephridii PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 32/102 (31.37%), Postives = 61/102 (59.80%), Query Frame = 1
Query:  274 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 579
            + + ++ N + +S+ PVL++ WA WCGPC+M+AP   ++AK+    V   K++T+ +P ++  + +RSIPT++      +   I GA+    L   LD+ ++
Sbjct:   40 LNEQNFSNFISNSDLPVLIDLWAEWCGPCKMMAPHFAQVAKQNP-YVVFAKIDTEANPRLSAAFNVRSIPTLVLMNKTTEVARISGALRTLELQQWLDQQLQ 140          
BLAST of EY661014 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 28/75 (37.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  310 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 534
            S   ++++F A WC PCRMIAP   +LAK++      FK++ D+  ++A ++G+ ++PT +F K GE  + ++GA
Sbjct:   27 SNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGA 101          
BLAST of EY661014 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 33/96 (34.38%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  283 SSWENLVISS-ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 567
            S +E L+    E  ++++F+A WCGPC+ IAP  +ELA  + G + C K++ D++ ++ +KY ++ +PT +F KNG+  E++ G V        L+
Sbjct:   16 SDFEQLIRQHPEKIIILDFYATWCGPCKAIAPLYKELATTHKGIIFC-KVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLE 110          
BLAST of EY661014 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 32/88 (36.36%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  310 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 573
            S+  ++++F A WC PCR IAP   +LAK++   V  FK++ D+   +A ++ ++++PT +F K GE KE+++GA  K  + + L+K+
Sbjct:   26 SKKLIVIDFTATWCPPCRFIAPVFADLAKKHLD-VVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAA-KEEIIANLEKH 111          
BLAST of EY661014 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 35/89 (39.33%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  310 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 576
            S+  V+V+F A WCGPCR IAP   +LAK+    V   K++TD+  ++A+ + I+++PT +F K G+  + ++GA  K  L ST+ K++
Sbjct:   27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGA-KKDELQSTIAKHL 113          
BLAST of EY661014 vs. ExPASy Swiss-Prot
Match: PDIA6_CAEEL (Probable protein disulfide-isomerase A6 OS=Caenorhabditis elegans GN=tag-320 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1
Query:  259 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNG 507
            NEV  +TD+++E+LV++S++  LVEF+APWCG C+ + P  +  A E  GKV    L+      +A K+ IR  PT+ +F  G
Sbjct:  164 NEVVELTDANFEDLVLNSKDIWLVEFFAPWCGHCKSLEPQWKAAASELKGKVRLGALDATVHTVVANKFAIRGFPTIKYFAPG 246          
BLAST of EY661014 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 29/71 (40.85%), Postives = 50/71 (70.42%), Query Frame = 1
Query:  322 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 534
            ++++F A WCGPCR+I P + ELAK++   VA FK++ DD  ++A +Y + ++P+ +  K G++ E I+GA
Sbjct:   30 IVIDFTASWCGPCRVITPYVSELAKKFP-HVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGA 99          
The following BLAST results are available for this feature:
BLAST of EY661014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
THIO_EMENI6.737e-1333.33Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
TRXH2_BRANA1.149e-1235.23Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
THIO_BORBU1.501e-1228.57Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 S... [more]
THIO3_CORNE1.960e-1231.37Thioredoxin C-3 OS=Corynebacterium nephridii PE=3 ... [more]
TRXH4_ARATH3.343e-1237.33Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
THIO1_CAEEL3.343e-1234.38Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
TRXH3_ARATH5.703e-1236.36Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_ARATH7.448e-1239.33Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
PDIA6_CAEEL7.448e-1240.96Probable protein disulfide-isomerase A6 OS=Caenorh... [more]
TRXH_FAGES9.728e-1240.85Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661014 ID=EY661014; Name=EY661014; organism=Citrus sinensis; type=EST; length=691bp
CCACGCGTCCGGAAAAAAGAAAGACAGAGAAAAATGGCTATGAAGAATTG
TTTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTACAATGTT
ACCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTGGTAACGGG
TTGAATAAATCCAATCTCTCATTCACTTCATCATGCTCATCTCTTTCTCT
TCCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGCAAAGCTCGGG
AAGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAAAACCTT
GTGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACCTTGGTG
CGGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCAAAGAAT
ACGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACAGATGATTCCCCCAAC
ATTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTTCTTCAA
GAATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAAATCTACTT
TGTCCTCTACTTTAGATAAATATGTAGAATGAATGGCCAAAAATCACATT
TACATGTTGTATGAATGACATATTAATCCAAGTTTATGTTTCATTTCAAA
TGTAGAAATCTCTTTCCTTTCAAAAAAAAAAAAAAAAAAAA
back to top