CX672696
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.849e-16 Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = -2 Query: 341 KVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAK-GWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKM 595 KV+K G+ GR++D++R + Y++L EL LF +EG L +P + GW++++ D E+DV++VGDDPW EF N VS I I + +EV++M Sbjct: 790 KVYKSGTY-GRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQM 874
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.849e-16 Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = -2 Query: 341 KVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAK-GWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKM 595 KV+K G+ GR++D++R + Y++L EL LF +EG L +P + GW++++ D E+DV++VGDDPW EF N VS I I + +EV++M Sbjct: 790 KVYKSGTY-GRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQM 874
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 3.154e-16 Identity = 40/96 (41.67%), Postives = 69/96 (71.88%), Query Frame = -2 Query: 323 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAK-GWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTD 607 R+ TKV+K+G+ VGR+ID+S+ +GY++L L +F++EG L + + GW+++Y D E+D++++GDDPW EF V I I + +EV++M++ D Sbjct: 1027 RTFTKVYKRGA-VGRSIDMSQFSGYDELKHALARMFSIEGQLEERQRIGWKLVYKDHEDDILLLGDDPWEEFVGCVKCIRILSPQEVQQMSLEGCD 1121
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.154e-16 Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = -2 Query: 341 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAK-GWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKM 607 R+ KV+K GS VGR++D++R + Y +L EL +F ++G L DP + GW++++ D ENDV+++GDDPW F N V I I + E+V KM Sbjct: 719 RTFVKVYKSGS-VGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKM 807
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.154e-16 Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = -2 Query: 341 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAK-GWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKM 607 R+ KV+K GS VGR++D++R + Y +L EL +F ++G L DP + GW++++ D ENDV+++GDDPW F N V I I + E+V KM Sbjct: 717 RTFVKVYKSGS-VGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKM 805
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFU_ORYSJ (Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 4.119e-16 Identity = 43/99 (43.43%), Postives = 68/99 (68.69%), Query Frame = -2 Query: 317 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAK-GWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYT-QEEVEKMTIGTTDDT 607 R+ TKVHK+G+ VGR+ID++R +GY++L ++ +F +EG L D + GW+++Y D E DV++VGDDPW +F V I I + QEE++ +G D+ Sbjct: 998 RTYTKVHKRGA-VGRSIDINRYSGYDELKHDVARMFGIEGQLGDQNRVGWKLVYEDHEKDVLLVGDDPWEDFVKCVRCIRILSPQEEMQMRLVGDFGDS 1095
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.119e-16 Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = -2 Query: 296 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKG-WRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTDDTQSCLDQA 607 R+ TKV KQGS VGR+ID++ Y++L S + +F ++G L P W+++Y D ENDV++VGDDPW EF N V I I + EV++M+ C+ A Sbjct: 852 RTYTKVQKQGS-VGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGMHVLNDCIQAA 955
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 4.119e-16 Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = -2 Query: 296 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKG-WRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTDDTQSCLDQA 607 R+ TKV KQGS VGR+ID++ Y++L S + +F ++G L P W+++Y D ENDV++VGDDPW EF N V I I + EV++M+ C+ A Sbjct: 852 RTYTKVQKQGS-VGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGMHVLNDCIQAA 955
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3) HSP 1 Score: 85.1149 bits (209), Expect = 5.379e-16 Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = -2 Query: 338 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDP-AKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMT 607 R+ TKV K GS VGR+ID++ Y +L S +E +F +EGLL P + GW+++Y D E+DV++VGDDPW EF V I I + EV++M+ Sbjct: 793 RTYTKVQKTGS-VGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMS 882 The following BLAST results are available for this feature:
BLAST of CX672696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX672696 ID=CX672696; Name=CX672696; organism=Citrus sinensis; type=EST; length=851bpback to top |