CX672696

Overview
NameCX672696
Unique NameCX672696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.849e-16
Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = -2
Query:  341 KVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAK-GWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKM 595
            KV+K G+  GR++D++R + Y++L  EL  LF +EG L +P + GW++++ D E+DV++VGDDPW EF N VS I I + +EV++M
Sbjct:  790 KVYKSGTY-GRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQM 874          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.849e-16
Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = -2
Query:  341 KVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAK-GWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKM 595
            KV+K G+  GR++D++R + Y++L  EL  LF +EG L +P + GW++++ D E+DV++VGDDPW EF N VS I I + +EV++M
Sbjct:  790 KVYKSGTY-GRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQM 874          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.154e-16
Identity = 40/96 (41.67%), Postives = 69/96 (71.88%), Query Frame = -2
Query:  323 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAK-GWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTD 607
            R+ TKV+K+G+ VGR+ID+S+ +GY++L   L  +F++EG L +  + GW+++Y D E+D++++GDDPW EF   V  I I + +EV++M++   D
Sbjct: 1027 RTFTKVYKRGA-VGRSIDMSQFSGYDELKHALARMFSIEGQLEERQRIGWKLVYKDHEDDILLLGDDPWEEFVGCVKCIRILSPQEVQQMSLEGCD 1121          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.154e-16
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = -2
Query:  341 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAK-GWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKM 607
            R+  KV+K GS VGR++D++R + Y +L  EL  +F ++G L DP + GW++++ D ENDV+++GDDPW  F N V  I I + E+V KM
Sbjct:  719 RTFVKVYKSGS-VGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKM 807          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.154e-16
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = -2
Query:  341 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAK-GWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKM 607
            R+  KV+K GS VGR++D++R + Y +L  EL  +F ++G L DP + GW++++ D ENDV+++GDDPW  F N V  I I + E+V KM
Sbjct:  717 RTFVKVYKSGS-VGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKM 805          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFU_ORYSJ (Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.119e-16
Identity = 43/99 (43.43%), Postives = 68/99 (68.69%), Query Frame = -2
Query:  317 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAK-GWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYT-QEEVEKMTIGTTDDT 607
            R+ TKVHK+G+ VGR+ID++R +GY++L  ++  +F +EG L D  + GW+++Y D E DV++VGDDPW +F   V  I I + QEE++   +G   D+
Sbjct:  998 RTYTKVHKRGA-VGRSIDINRYSGYDELKHDVARMFGIEGQLGDQNRVGWKLVYEDHEKDVLLVGDDPWEDFVKCVRCIRILSPQEEMQMRLVGDFGDS 1095          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.119e-16
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = -2
Query:  296 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKG-WRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTDDTQSCLDQA 607
            R+ TKV KQGS VGR+ID++    Y++L S +  +F ++G L  P    W+++Y D ENDV++VGDDPW EF N V  I I +  EV++M+         C+  A
Sbjct:  852 RTYTKVQKQGS-VGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGMHVLNDCIQAA 955          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.119e-16
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = -2
Query:  296 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKG-WRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTDDTQSCLDQA 607
            R+ TKV KQGS VGR+ID++    Y++L S +  +F ++G L  P    W+++Y D ENDV++VGDDPW EF N V  I I +  EV++M+         C+  A
Sbjct:  852 RTYTKVQKQGS-VGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGMHVLNDCIQAA 955          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 5.379e-16
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = -2
Query:  338 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDP-AKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMT 607
            R+ TKV K GS VGR+ID++    Y +L S +E +F +EGLL  P + GW+++Y D E+DV++VGDDPW EF   V  I I +  EV++M+
Sbjct:  793 RTYTKVQKTGS-VGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMS 882          
The following BLAST results are available for this feature:
BLAST of CX672696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ARFQ_ORYSJ1.849e-1646.51Auxin response factor 17 OS=Oryza sativa subsp. ja... [more]
ARFQ_ORYSI1.849e-1646.51Auxin response factor 17 OS=Oryza sativa subsp. in... [more]
ARFS_ORYSJ3.154e-1641.67Auxin response factor 19 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSJ3.154e-1645.56Auxin response factor 12 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSI3.154e-1645.56Auxin response factor 12 OS=Oryza sativa subsp. in... [more]
ARFU_ORYSJ4.119e-1643.43Auxin response factor 21 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSJ4.119e-1641.90Auxin response factor 11 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSI4.119e-1641.90Auxin response factor 11 OS=Oryza sativa subsp. in... [more]
ARFE_ARATH5.379e-1647.25Auxin response factor 5 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_18F07_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-18F07-K14-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672696 ID=CX672696; Name=CX672696; organism=Citrus sinensis; type=EST; length=851bp
TTTTTTTTCACGCCAAAACATACTGTGACTGAATTATTGATGCTAGCATG
TTGCCGGTAGGCAGAAAGCACAAGTTGAAAACAGTTTACAACTGTGATTG
TCGATAATAGAAGGCCAAATAGGAATGCGCACAGAGGCAAACATAAGACC
CCTAATTAGGTTCATATTTATTACGTTGTACATACAAACATATCATCAAG
CACGTCTAGGAACTTCAAACCCTTACTACCGTCGGAGAAGAGTCTGGCTG
GCTGACTGATGAAGACTTCGAAACTGAAACTTCCATTATTACCGGTGCTT
GATCCAAGCAGCTTTGAGTATCATCGGTGGTTCCAATGGTCATCTTCTCC
ACTTCTTCTTGCGTATAGATATGGATCTTGGACACCTCATTACAGAATTC
ATGCCAAGGATCATCCCCAACAACCATCACATCATTCTCACTGTCGGTGT
ACAAGATCCGCCATCCTTTAGCAGGATCTCGTAAAAGGCCTTCCATGTTA
AATAAGTGCTCTAGTTCACTTAGCAGGTCATTGTAGCCATTCAGTCTCGA
GAGATCAATAGCTCTTCCAACCAAGCTGCCTTGCTTGTGAACCTTTGTAC
AACTCCTCTTACCAGGGCTTTGAGAGCTTGGAGTAGGTGTTTCAGAAGTC
AGAGAGAACCCAAAAAGCTTACATCCAGCTGCTGTCCCATTAAAGCTTCC
ATCTTTGTGACTCGTCATATTTGCCTTGAAAGTGGGTGTAGGGATATTTT
CCACAGGCTTATGCTCGTTCAGAAGATTTTCTTTTCTAATTTCGGCTCCA
ATTGCTGGCATCTGGATAGAAGATGAGTTGAGTTTAACATTTTCTCTCTG
G
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