EY664891

Overview
NameEY664891
Unique NameEY664891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.000e-22
Identity = 75/197 (38.07%), Postives = 102/197 (51.78%), Query Frame = 2
Query:  224 WFPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSW--YDAGSREYFADPT------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGS-PLK-LALHV 784
            WFPG   P+ LDGS PGD+GFDPLGL + PE  + F ++E+ H RWAML V G+L+PE L     ++   W     G   Y  +P       T+  ++   + + E +R           ++ D P K K      YPGG  FDP+ + K  P     L+ K   +GRLAMLAF GFC Q     G+ PL+ LA H+
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR----------TMEKD-PEKKK------YPGGA-FDPLGFSK-DPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHL 225          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.306e-22
Identity = 71/197 (36.04%), Postives = 96/197 (48.73%), Query Frame = 2
Query:  224 WFPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSW--YDAGSREYFADPT------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQ--PFIRAGSPLKLALHV 784
            W PG   PS+LDGS PGD+GFD LGLG  P  L+ + ++ELIH RWAMLAV GI++PE L     ++   W     G   Y   P       T+  ++   + +VE +R  +                 K      YPGG  FDP+ + K  P     L+ K   +GRLA+LA  GFC Q   ++  G    LA H+
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSME-----------------KDSEKKKYPGGA-FDPLGYSK-DPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHL 226          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.487e-21
Identity = 76/239 (31.80%), Postives = 100/239 (41.84%), Query Frame = 2
Query:  212 DRPLWFPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKW-------------------------------------------FAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSRE------YFADP-----TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPL 766
            DRPLWFPG+  P +LDGSL GDYGFDP GLG   E L++                                           F + ELIHGRWAMLA  G +  EWL  +      +W DAG  E      Y   P     +TL  +++ ++G++E +R A++      D +  L           YPGG +FDP+      P     L+       RLAM+ F GF  Q       PL
Sbjct:   51 DRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAEL------DSEKRL-----------YPGGKFFDPLGLAS-DPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPL 265          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.305e-19
Identity = 83/234 (35.47%), Postives = 107/234 (45.73%), Query Frame = 2
Query:  143 VGRGGVIVNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            VGR  +    TK VSS      PDR  +   F G  PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A             L   T P     YPGG  FDP+      P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   28 VGRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 244          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.011e-19
Identity = 83/234 (35.47%), Postives = 108/234 (46.15%), Query Frame = 2
Query:  143 VGRGGVIVNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            VGR  +   A+K VSS      PDR  +   F G  PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+     SW+ AGS+       +Y  + +         ++  Q+ LMG VEG R A             L   T P     YPGG  FDP+      P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   10 VGRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLALAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 226          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 81/246 (32.93%), Postives = 111/246 (45.12%), Query Frame = 2
Query:  131 TKCLVGRGGVIVNAT----KGVSSVCEPLPPDRPLWFP--GSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            +  L+G   V +  T    K VSS       DR L+       PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     +I++P                    YPGG  FDP+   +R P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   23 SSALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDP-------------------LYPGGS-FDPLGLAER-PQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHI 247          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 80/225 (35.56%), Postives = 104/225 (46.22%), Query Frame = 2
Query:  170 ATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            A+K VSS      PDR  +   F G  PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A             L   T P     YPGG  FDP+      P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   29 ASKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 236          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.494e-18
Identity = 79/248 (31.85%), Postives = 109/248 (43.95%), Query Frame = 2
Query:  101 IPQKRFTEKITKCLVGRGGVIVNATKGVSSVCEPLPPDRPLWF-PGST-PPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIE--NFSWYDAGSR-------EYFADPTTL--------FVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            I  +  T K+       G     A    S+  E   PDR  W  P ST  P++L G  PGDYG+D  GL +DPE  K + + E+IH RWA+L   GIL PE L +   ++     W+ AG++       +Y   P  +          VQ+ LMG +EG R    +N G                D  YPG   FDP+      P     L+ K   +GRLAM +  GF  Q  +    P++ LA H+
Sbjct:    6 ISNRALTVKVEAAKKAAGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR----VNGG----------PAGEGLDPLYPGES-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHL 237          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.549e-18
Identity = 74/206 (35.92%), Postives = 98/206 (47.57%), Query Frame = 2
Query:  212 DRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINP-GCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK 769
            DRPL+   F GS PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A    P G V+             D  YPGG  FDP+      P     L+ K   +GRLAM +  GF  Q  +    P++
Sbjct:   53 DRPLYLGPFSGS-PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG--GPLGEVE-------------DPIYPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18
Identity = 69/203 (33.99%), Postives = 95/203 (46.80%), Query Frame = 2
Query:  242 PPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++ VQ+ LMG VEG R A     ++++P                    YPGG  FDP+      P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP-------------------LYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 246          
The following BLAST results are available for this feature:
BLAST of EY664891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB121_HORVU1.000e-2238.07Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.306e-2236.04Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB4B_ARATH5.487e-2131.80Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB23_SOYBN2.305e-1935.47Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_SOYBN3.011e-1935.47Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_WHEAT1.144e-1832.93Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_CUCSA1.144e-1835.56Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO1.494e-1831.85Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_POLMU2.549e-1835.92Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_ORYSJ5.678e-1833.99Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664891 ID=EY664891; Name=EY664891; organism=Citrus sinensis; type=EST; length=844bp
CTCCCGACTGAGCAAAGCTTTGTCATCTTCATTCTCATCCATGGCCCTAG
CCATTGCTTCTACAGCACTTTCGACCCTCCCATTCAGCAGGTGCAGGGAC
ATACCTCAGAAACGTTTTACAGAGAAGATTACAAAATGCCTAGTGGGAAG
AGGTGGTGTGATAGTGAATGCAACAAAAGGAGTGTCAAGTGTTTGTGAAC
CGCTCCCTCCGGACAGACCATTGTGGTTCCCTGGCAGCACACCGCCCTCT
TGGCTTGATGGCAGCCTTCCGGGAGATTATGGCTTCGATCCTCTTGGATT
AGGGTCTGATCCAGAGTTGCTTAAATGGTTTGCTCAAGCTGAGCTAATTC
ACGGCAGGTGGGCAATGCTGGCTGTGGCTGGAATCCTCATACCAGAATGG
CTTGAAAGCATTGGCCTCATTGAGAACTTCTCATGGTACGATGCTGGTTC
TCGTGAATACTTTGCAGACCCCACAACTTTATTTGTGGTTCAGTTGGCCC
TGATGGGATGGGTAGAAGGCAGAAGATGGGCTGATATAATTAATCCAGGA
TGTGTTGACATTCAACCAGATCTCCCATACAAGACAAAGCCGAAGCCAGA
TGTTGGCTACCCTGGTGGGATATGGTTTGATCCCATGATGTGGGGAAAGA
GGTCCCCANAGCCTGTGATGGTGTTGAGGACTAAGGGANNNTAAGATGGG
CGTCTTGCTATGCTAGCTTTTCGTGGCTTCTGCTTTCAGCCATTTATCAG
GGCAGGGTCCCCTTTGAAACTGGCTTTGCATGTGCAAATCCTGGTCATTG
CACGNATTCTGGCTTTACATNACATGATGCTTGGATTGGACTGA
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