EY664891

Overview
NameEY664891
Unique NameEY664891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.652e-17
Identity = 80/244 (32.79%), Postives = 111/244 (45.49%), Query Frame = 2
Query:  140 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            + G G V +  T    K VSS      PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+   +  P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   27 ITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP-------------------LYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 248          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 77/230 (33.48%), Postives = 106/230 (46.09%), Query Frame = 2
Query:  173 TKGVSSVCEP-LPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            TK V+S   P   PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   42 TKKVASSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP-------------------LYPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 249          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 74/225 (32.89%), Postives = 103/225 (45.78%), Query Frame = 2
Query:  173 TKGVSSVCEPLP----PDRPLWFPG-----STPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLI--ENFSWY-------DAGSREYFAD--PTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            +K VS   + L     PDR ++ P      S  P +L+G + GDYG+DP GLG  PE    +   ELIH RWAML  AG +IPE L   G        W+       D  +  YF    P  L +  +A +  + G  +  I N   +D +  L           +PGG  FDP+   K  P    +L+ K   +GRLAM A  GF  Q ++    P++ LA H+
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNG--LDFEDKL-----------HPGGP-FDPLGLAK-DPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 258          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 77/230 (33.48%), Postives = 106/230 (46.09%), Query Frame = 2
Query:  173 TKGVSSVCEP-LPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            TK V+S   P   PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   43 TKKVASSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP-------------------LYPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 250          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 80/244 (32.79%), Postives = 111/244 (45.49%), Query Frame = 2
Query:  140 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            + G G V +  T    K VSS      PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+   +  P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   26 VTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP-------------------LYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 247          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.818e-17
Identity = 78/244 (31.97%), Postives = 110/244 (45.08%), Query Frame = 2
Query:  140 LVGRGGVIVNATKG----VSSVCEPLPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            ++G G + +  T G    V S      PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   27 IIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP-------------------LYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 248          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.818e-17
Identity = 64/192 (33.33%), Postives = 90/192 (46.88%), Query Frame = 2
Query:  245 PSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLES-IGL-IENFSWYDAGSR-------EYFADPTTLFV--------VQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK 769
            PS+L+G  PGDYG+D  GL +DPE        E+IHGRWAML   G + PE L+  +G+  +   W+ AGS+       +Y  +P  +           Q+ LMG VEG R   +   G              + +  YPGG +FDP+      P     L+ K   +GRLAM +  GF  Q  +    PL+
Sbjct:   67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVG--------------EGNDLYPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.818e-17
Identity = 79/242 (32.64%), Postives = 111/242 (45.87%), Query Frame = 2
Query:  140 LVGRGGVIVNAT--KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            + G G V +  T  K V+S      PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+   +  P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   27 ITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP-------------------LYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 246          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.681e-17
Identity = 79/244 (32.38%), Postives = 111/244 (45.49%), Query Frame = 2
Query:  140 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            + G G V +  T    K +SS      PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+   +  P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   27 ITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP-------------------LYPGGS-FDPLGLAE-DPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 248          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.807e-17
Identity = 74/212 (34.91%), Postives = 100/212 (47.17%), Query Frame = 2
Query:  209 PDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            PDR L+   F G  PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AG++       +Y  +P+         ++  Q+ LMG VEG R A             L   T P     YPGG  FDP+   +  P     L+ K   +GRLAM +  GF  Q  +    P++ LA H+
Sbjct:   61 PDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 255          
The following BLAST results are available for this feature:
BLAST of EY664891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB24_TOBAC1.652e-1732.79Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB28_PEA2.158e-1733.48Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB26_ARATH2.158e-1732.89Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB22_PEA2.158e-1733.48Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_TOBAC2.158e-1732.79Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2A_SPIOL2.818e-1731.97Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU2.818e-1733.33Chlorophyll a-b binding protein of LHCII type III,... [more]
CB22_TOBAC2.818e-1732.64Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB25_TOBAC3.681e-1732.38Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB2B_PINSY4.807e-1734.91Chlorophyll a-b binding protein type 2 member 1B, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664891 ID=EY664891; Name=EY664891; organism=Citrus sinensis; type=EST; length=844bp
CTCCCGACTGAGCAAAGCTTTGTCATCTTCATTCTCATCCATGGCCCTAG
CCATTGCTTCTACAGCACTTTCGACCCTCCCATTCAGCAGGTGCAGGGAC
ATACCTCAGAAACGTTTTACAGAGAAGATTACAAAATGCCTAGTGGGAAG
AGGTGGTGTGATAGTGAATGCAACAAAAGGAGTGTCAAGTGTTTGTGAAC
CGCTCCCTCCGGACAGACCATTGTGGTTCCCTGGCAGCACACCGCCCTCT
TGGCTTGATGGCAGCCTTCCGGGAGATTATGGCTTCGATCCTCTTGGATT
AGGGTCTGATCCAGAGTTGCTTAAATGGTTTGCTCAAGCTGAGCTAATTC
ACGGCAGGTGGGCAATGCTGGCTGTGGCTGGAATCCTCATACCAGAATGG
CTTGAAAGCATTGGCCTCATTGAGAACTTCTCATGGTACGATGCTGGTTC
TCGTGAATACTTTGCAGACCCCACAACTTTATTTGTGGTTCAGTTGGCCC
TGATGGGATGGGTAGAAGGCAGAAGATGGGCTGATATAATTAATCCAGGA
TGTGTTGACATTCAACCAGATCTCCCATACAAGACAAAGCCGAAGCCAGA
TGTTGGCTACCCTGGTGGGATATGGTTTGATCCCATGATGTGGGGAAAGA
GGTCCCCANAGCCTGTGATGGTGTTGAGGACTAAGGGANNNTAAGATGGG
CGTCTTGCTATGCTAGCTTTTCGTGGCTTCTGCTTTCAGCCATTTATCAG
GGCAGGGTCCCCTTTGAAACTGGCTTTGCATGTGCAAATCCTGGTCATTG
CACGNATTCTGGCTTTACATNACATGATGCTTGGATTGGACTGA
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