EY664891

Overview
NameEY664891
Unique NameEY664891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.399e-16
Identity = 77/232 (33.19%), Postives = 103/232 (44.40%), Query Frame = 2
Query:  164 VNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            V   K VSS      PDR  +   F G  P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE     G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++I+P                    YPGG  FDP+      P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   38 VTKAKPVSSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP-------------------LYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 247          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.399e-16
Identity = 78/244 (31.97%), Postives = 110/244 (45.08%), Query Frame = 2
Query:  140 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            + G G V +  T    K VSS      P+R  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+  GS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+   +  P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   27 ITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP-------------------LYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 248          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.827e-16
Identity = 80/239 (33.47%), Postives = 106/239 (44.35%), Query Frame = 2
Query:  140 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            + G G   +  T    K VSS      PDR  +   F G  P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE     G+      W  AGS+       +Y  +P+         ++  Q+ LMG VEG R A    P  V + P             YPGG  FDP+   +  P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   27 ITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAG--GPLGVVVDP------------LYPGGS-FDPLGLAE-DPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHL 248          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16
Identity = 64/192 (33.33%), Postives = 83/192 (43.23%), Query Frame = 2
Query:  218 PLWFPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFA-DPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPL-KLALHVQ 787
            PLWFP +  PSWL+G   GD GFDP GL +DP+  +    AE+ HGR AMLAV G L+P++L   G+     WY+A            +F     +     G                    K    P   YPG   FDP+           +       +GRLA+ A  GF  Q  +  GSPL  LA H+Q
Sbjct:    3 PLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQNAGIGLKEVAIFTAAYGVFEVARG-------------------VKENSDPTTIYPG---FDPLNLTTDYTKEAEIK------NGRLALTALLGFEVQRHVVGGSPLANLAEHLQ 160          

HSP 2 Score: 75.485 bits (184), Expect = 4.211e-13
Identity = 60/189 (31.75%), Postives = 81/189 (42.86%), Query Frame = 2
Query:  221 LWFPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPL-KLALHV 784
            LWFP + PP+ L G  P D GFDPL L +DP++      AE+ HGR AML   G ++PE      L+   +W++AG      D   L  + +A+    E  R     N              K + D  YPG   FDP+             R     +GRLA+ A  G   Q      SPL  L+ H+
Sbjct:  189 LWFPNAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPE------LLGKGAWFEAGDS---VDGLKLGFITMAIAAPTEYWRGQGGFN------------WQKGELDRSYPG---FDPL------NLTTDYTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHL 347          

HSP 3 Score: 70.0922 bits (170), Expect = 1.769e-11
Identity = 57/185 (30.81%), Postives = 80/185 (43.24%), Query Frame = 2
Query:  212 DRPLWFPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPL 766
            +R LWFP   PP +L G   GD GFDP GL +DP   +    AE+ H R +MLA+ G L+PE      L+ N +W+    +    D     VV L ++  +E  R     N G +       +  +   D  YPG   FDP+           +       +GRLAM    G   Q  +   SP+
Sbjct:  370 ERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPE------LLGNGAWFQIWDK---VDFNRFAVVALQVVAPLEYWRG----NGGFL-------WNDEETVDQSYPG---FDPLNLTTEYTKEAEIK------NGRLAMNGMFGLEVQSHVTGKSPI 525          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16
Identity = 68/214 (31.78%), Postives = 94/214 (43.93%), Query Frame = 2
Query:  185 SSVCEPLPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPTTLF--------VVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK 769
            SS  E   P+R  W   +  +  P++L G  PGDYG+D  GL +DPE  K + + ELIH RWAML   G   PE L   G       W+ AG++       +Y  +P+ +          VQ+ LMG +EG R    +N G                D  YPG   FDP+      P     L+ K   +GRLA  +  GF  Q  +    P++
Sbjct:   31 SSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGG----------PAGEGLDPLYPGES-FDPLGLAD-DPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQ 228          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16
Identity = 71/212 (33.49%), Postives = 97/212 (45.75%), Query Frame = 2
Query:  209 PDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADP--------TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            PDR ++   F G  PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AG++       +Y   P          ++  Q+ LMG +EG R A             L   T P     YPGG  FDP+      P     ++ K   +GRLAM +  GF  Q  +    P++ LA H+
Sbjct:   65 PDRVMYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG----------GPLGEVTDPI----YPGGN-FDPLGLAD-DPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 259          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16
Identity = 67/204 (32.84%), Postives = 91/204 (44.61%), Query Frame = 2
Query:  212 DRPLWFP--GSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK 769
            DRP +        PS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P          ++  Q+ LMG+VEG R       G   +   L        D  YPGG  FDP+      P     L+ K   +GRLAM +  GF  Q  +    P++
Sbjct:   53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYR------VGGGPLGEGL--------DKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16
Identity = 65/197 (32.99%), Postives = 90/197 (45.69%), Query Frame = 2
Query:  245 PSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            PS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AG++       +Y  +P          ++  Q+ LMG +EG R       G   +   L        D  YPGG  FDP+      P     L+ K   +GRLAM +  GF  Q  +    P++ LA H+
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYR------VGGGPLGEGL--------DPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHI 245          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.315e-16
Identity = 68/208 (32.69%), Postives = 90/208 (43.27%), Query Frame = 2
Query:  209 PDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIE--NFSWYDAGSREYFADP----------------TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK 769
            PDR  +   F  +  P +L G  PGDYG+D  GL +DP+    + + ELIH RWA+L   GIL PE L     ++     W+ AG+ + FAD                      VQ+ LMG  E  R     N G      DL        D  YPGG  FDP+      P     L+ K   +GRLAM +  GF  Q  +    P++
Sbjct:   36 PDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGA-QIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR----ANGGSEGFLDDL--------DTLYPGGP-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQ 228          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.315e-16
Identity = 76/232 (32.76%), Postives = 103/232 (44.40%), Query Frame = 2
Query:  164 VNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            V   K VSS      PDR  +   F G  P S+L G  PGDYG+D   L +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      P     L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   39 VTKAKPVSSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP-------------------LYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 248          
The following BLAST results are available for this feature:
BLAST of EY664891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB24_PETSP1.399e-1633.19Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_NICPL1.399e-1631.97Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_PETSP1.827e-1633.47Chlorophyll a-b binding protein 22L, chloroplastic... [more]
LH18_EUGGR4.069e-1633.33Light-harvesting complex I LH38 proteins (Fragment... [more]
CB2_CHLRE4.069e-1631.78Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_PYRPY4.069e-1633.49Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB26_PETSP4.069e-1632.84Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_LEMGI4.069e-1632.99Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE5.315e-1632.69Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_PETSP5.315e-1632.76Chlorophyll a-b binding protein 91R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664891 ID=EY664891; Name=EY664891; organism=Citrus sinensis; type=EST; length=844bp
CTCCCGACTGAGCAAAGCTTTGTCATCTTCATTCTCATCCATGGCCCTAG
CCATTGCTTCTACAGCACTTTCGACCCTCCCATTCAGCAGGTGCAGGGAC
ATACCTCAGAAACGTTTTACAGAGAAGATTACAAAATGCCTAGTGGGAAG
AGGTGGTGTGATAGTGAATGCAACAAAAGGAGTGTCAAGTGTTTGTGAAC
CGCTCCCTCCGGACAGACCATTGTGGTTCCCTGGCAGCACACCGCCCTCT
TGGCTTGATGGCAGCCTTCCGGGAGATTATGGCTTCGATCCTCTTGGATT
AGGGTCTGATCCAGAGTTGCTTAAATGGTTTGCTCAAGCTGAGCTAATTC
ACGGCAGGTGGGCAATGCTGGCTGTGGCTGGAATCCTCATACCAGAATGG
CTTGAAAGCATTGGCCTCATTGAGAACTTCTCATGGTACGATGCTGGTTC
TCGTGAATACTTTGCAGACCCCACAACTTTATTTGTGGTTCAGTTGGCCC
TGATGGGATGGGTAGAAGGCAGAAGATGGGCTGATATAATTAATCCAGGA
TGTGTTGACATTCAACCAGATCTCCCATACAAGACAAAGCCGAAGCCAGA
TGTTGGCTACCCTGGTGGGATATGGTTTGATCCCATGATGTGGGGAAAGA
GGTCCCCANAGCCTGTGATGGTGTTGAGGACTAAGGGANNNTAAGATGGG
CGTCTTGCTATGCTAGCTTTTCGTGGCTTCTGCTTTCAGCCATTTATCAG
GGCAGGGTCCCCTTTGAAACTGGCTTTGCATGTGCAAATCCTGGTCATTG
CACGNATTCTGGCTTTACATNACATGATGCTTGGATTGGACTGA
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