EY664891

Overview
NameEY664891
Unique NameEY664891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.183e-13
Identity = 69/234 (29.49%), Postives = 96/234 (41.03%), Query Frame = 2
Query:  146 GRGGVIVNATKGVSSVCEPLPPDRPLWFPGSTP--------PSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWL---ESIGLIENFSWYDAGSR-------EYFADPTTL--------FVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK 769
            GR G   +  KG  +V +        + P +T         P    G  PGDYG+D  GL +DPE  K + + ELIH R  +L   G++ PE L   + I   +   W+ AG+         Y  +P+ +          VQ+ LMG VEG R    +N G                D  YPG   FDP+      P     L+ K   +GRLAM A  GF  Q  +    P++
Sbjct:   34 GRAGK--STKKGAKAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGG----------PAGEGLDPLYPGEA-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIE 249          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.565e-12
Identity = 59/192 (30.73%), Postives = 82/192 (42.71%), Query Frame = 2
Query:  221 LWFPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMM----WGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPL-KLALH 781
            +WFPG+ PP+ L G  P D GFDPL + +DP +      +E+ H R +MLA+ G ++PE      L+   +W++ G+     D   L  + +A+    E  R     N              K   D  YPG   FDP+     + KR              +GRLAM    G  FQ      SPL  LA H
Sbjct:  161 VWFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPE------LLGKGAWFEVGNS---VDGIKLGFILMAIAAPTEYWRGNGGFN------------WDKGTADRSYPG---FDPLKLTTDYTKREIK-----------NGRLAMTGLLGLTFQYLATGESPLANLAAH 317          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.037e-11
Identity = 76/234 (32.48%), Postives = 100/234 (42.74%), Query Frame = 2
Query:  143 VGRGGVIVNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK-LALHV 784
            VGR  +   A K VSS      PDR  +   F G  P S+L G   G        L +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A             L   T P     YPGG  FDP+      P  +  L+ K   +GRLAM +  GF  Q  +    PL+ LA H+
Sbjct:   29 VGRVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLGLAD-DPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 237          
The following BLAST results are available for this feature:
BLAST of EY664891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB2_DUNSA7.183e-1329.49Chlorophyll a-b binding protein of LHCII type I, c... [more]
LH15_EUGGR3.565e-1230.73Light-harvesting complex I LH35 proteins (Fragment... [more]
CB22_SOYBN1.037e-1132.48Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664891 ID=EY664891; Name=EY664891; organism=Citrus sinensis; type=EST; length=844bp
CTCCCGACTGAGCAAAGCTTTGTCATCTTCATTCTCATCCATGGCCCTAG
CCATTGCTTCTACAGCACTTTCGACCCTCCCATTCAGCAGGTGCAGGGAC
ATACCTCAGAAACGTTTTACAGAGAAGATTACAAAATGCCTAGTGGGAAG
AGGTGGTGTGATAGTGAATGCAACAAAAGGAGTGTCAAGTGTTTGTGAAC
CGCTCCCTCCGGACAGACCATTGTGGTTCCCTGGCAGCACACCGCCCTCT
TGGCTTGATGGCAGCCTTCCGGGAGATTATGGCTTCGATCCTCTTGGATT
AGGGTCTGATCCAGAGTTGCTTAAATGGTTTGCTCAAGCTGAGCTAATTC
ACGGCAGGTGGGCAATGCTGGCTGTGGCTGGAATCCTCATACCAGAATGG
CTTGAAAGCATTGGCCTCATTGAGAACTTCTCATGGTACGATGCTGGTTC
TCGTGAATACTTTGCAGACCCCACAACTTTATTTGTGGTTCAGTTGGCCC
TGATGGGATGGGTAGAAGGCAGAAGATGGGCTGATATAATTAATCCAGGA
TGTGTTGACATTCAACCAGATCTCCCATACAAGACAAAGCCGAAGCCAGA
TGTTGGCTACCCTGGTGGGATATGGTTTGATCCCATGATGTGGGGAAAGA
GGTCCCCANAGCCTGTGATGGTGTTGAGGACTAAGGGANNNTAAGATGGG
CGTCTTGCTATGCTAGCTTTTCGTGGCTTCTGCTTTCAGCCATTTATCAG
GGCAGGGTCCCCTTTGAAACTGGCTTTGCATGTGCAAATCCTGGTCATTG
CACGNATTCTGGCTTTACATNACATGATGCTTGGATTGGACTGA
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