EY664875

Overview
NameEY664875
Unique NameEY664875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 356.681 bits (914), Expect = 1.084e-97
Identity = 178/235 (75.74%), Postives = 191/235 (81.28%), Query Frame = 2
Query:   62 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            GRI+MRK+ +K    +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADP TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKA +QIF EGGLDYLGNPSLIHA SILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYP GSFDP GLADDPEA AEL+V+E +     +        + +VT +GPL+N A HLA P N NA AY T   P
Sbjct:   25 GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 259          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 4.119e-97
Identity = 177/254 (69.69%), Postives = 200/254 (78.74%), Query Frame = 2
Query:    5 ASGGKTVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            A  GK VNL+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKA +QIF +GGLDYLGNPSL+HA SILAIWA QV+LMGAVEGYR+AG GPLGE  D LYP GSFDP GLA DPEA AEL+V+E +     +        + +VT +GP++N A HLA P N NA A+ T   P
Sbjct:   12 AFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVP 265          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 2.044e-96
Identity = 176/254 (69.29%), Postives = 199/254 (78.35%), Query Frame = 2
Query:    5 ASGGKTVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            A  GK V L+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKA +QIF +GGLDYLGNPSL+HA SILAIWA QV+LMGAVEGYR+AG GPLGE  D LYP GSFDP GLA DPEA AEL+V+E +     +        + +VT +GP++N A HLA P N NA A+ T   P
Sbjct:   12 AFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVP 265          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 3.487e-96
Identity = 182/249 (73.09%), Postives = 197/249 (79.12%), Query Frame = 2
Query:   14 GKTVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            G+ + LAPS  EL  G R+SMRKT  K+VSSGSPWYGPDRVKYLGPFSGE PSYLTGEF G        LSADP TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKA +QIF EGGLDYLGNPSLIHA SILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YP GSFDP GLADDPEALAEL+V+E +     +        + +VT +GPL+N A HLA P N NA AY T L P
Sbjct:   15 GQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCP 254          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 1.325e-95
Identity = 174/251 (69.32%), Postives = 196/251 (78.09%), Query Frame = 2
Query:   14 GKTVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            GK V   PS + L    R++MRKT +K+  VSS SPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADP TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA WFKA +QIF +GGLDYLGNPSL+HA S+LAIWACQVVLMGAVEGYRIAGGPLGE+ DPLYP GSFDP GLA+ P+A AEL+V+E +     +        + +VT +GPL++ A H+A P N NA    T   P
Sbjct:   15 GKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVP 264          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 3.609e-93
Identity = 171/227 (75.33%), Postives = 185/227 (81.50%), Query Frame = 2
Query:   83 TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRP-LVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            T  K  SS SPW+GPD VKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKA +QIF EGGLDYLGNPSL+HA SILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYP GSFDP GLA+ PEA AEL+V+E +  G L    +   F P +VT +GPL+N A HLA P N NA +Y T   P
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELK-NGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVP 226          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 1.161e-91
Identity = 168/244 (68.85%), Postives = 188/244 (77.05%), Query Frame = 2
Query:   44 NELSNG-----GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            NELS        R+ M    SK+  SGS WYG DR  YLGPFSG PPSYL+GEFPGDYGWDTAGLSADP TFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKA +QIF EGGLDYLGNPSL+HA SILAIWACQV+LMGAVEGYR+AGGPLGEV DP+YP GSFDP GLADDPEA AEL+V+E +     +        + +VT +GP++N + HLA P   NA AY T  +P
Sbjct:   21 NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTP 263          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 7.525e-91
Identity = 168/259 (64.86%), Postives = 193/259 (74.52%), Query Frame = 2
Query:    2 HASGGKTVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            H++     +L    NELS         R++MR+T SKS  S + WYG DR K+LGPFSGE PSYL GEF GDYGWDTAGLS+DP TFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKA AQIF EGGLDYLGNPSL+HA SILAIWACQVVLMGAVEGYR+AGGPLGEVTDP+YP GSFDP GLADDP+  AEL+V+E +     +        + +VT +GPL+N   HLA P   NA AY  T  P
Sbjct:    8 HSTALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPP 266          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 7.525e-91
Identity = 162/234 (69.23%), Postives = 185/234 (79.06%), Query Frame = 2
Query:   59 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            GGR+SMR+T   + +S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP TFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKA +QIF EGGLDYLGNP+LIHA SILAIWACQVVLMG VEGYR+ GGPLGE  DP+YP G+FDP GLADDP+A AEL+V+E +     +        + +VT +GP++N   HLA P   NA AY T   P
Sbjct:   32 GGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVP 263          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 3.161e-89
Identity = 162/235 (68.94%), Postives = 178/235 (75.74%), Query Frame = 2
Query:   62 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            GRI+MRKT +K     SGSPWYG DRV YLGP SG PPSYLTGEFPGDYGWDT GLSADP TFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKA +QIF EGGL + GNPSL+HA SILAIWACQVVLMGAVEGY +AGG LGEV DPLY  GSFDP GL DDPE  AEL+V+E +     +        + +VT +GP++N A HL  P N NA AY T   P
Sbjct:   28 GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVP 262          
The following BLAST results are available for this feature:
BLAST of EY664875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB22_ORYSJ1.084e-9775.74Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH4.119e-9769.69Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB22_ARATH2.044e-9669.29Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_SOYBN3.487e-9673.09Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_WHEAT1.325e-9569.32Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA3.609e-9375.33Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB23_POLMU1.161e-9168.85Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB2_PHYPA7.525e-9164.86Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_GOSHI7.525e-9169.23Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB48_MAIZE3.161e-8968.94Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664875 ID=EY664875; Name=EY664875; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGGCGGCAAGACTGTGAACCTTGCCCCTTCAGGCAATGAGC
TGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTT
TCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCC
ATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACT
ACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCATAAACCTTTGCCAAG
AACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCT
TGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTG
AGGCCGTGTGGTTCAAGGCGGNGGCCCAGATCTTCATCGAGGGCGGGCTT
GACTACTTGGGGAACCCAAGCCTGATCCACGCTCATAGCATCTTGGCCAT
CTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTG
CTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGTTGGCAGC
TTTGATCCATGGGGTTTGGCTGATGACCCGGAAGCTTTGGCTGAACTCAG
GGTAAGGGAATCAAGAATGGAAGGTTGGCTATTGTCTCCATGGTTGGTTT
CTTCGTTCAGGCCATTGGTAACGGCAAGGGGCCCGTTAAAGAACTTTGCC
CACCACCTGGCTGGACCTGGTAATTACAATGCCGGGGCCTACCCAACCAC
TTTGTCCCCGGAAGTGACCTTCCGGTGATAAAAATTTTCTCTTTCGGGTT
CTTGGATTAATGGAATTTGTGGGGACCCATGGAGCTTTATTTGAGTGGGG
TTATTATAAAAGCCCAATTGGACCTGGCTGGTTTTTGGCAAAAAAAAAAA
AGGCGGCGCTTTAAGGT
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