EY664875

Overview
NameEY664875
Unique NameEY664875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 2.266e-87
Identity = 156/233 (66.95%), Postives = 181/233 (77.68%), Query Frame = 2
Query:   62 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            GRI+MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP TFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKA +QIF EGGLDYLGNP+L+HA SILAIWACQVVLMG VEGYR+ GGPLGE  D +YP G+FDP GLADDPEA AEL+V+E +     +        + +VT +GP++N + H+  P   NA AY T   P
Sbjct:   33 GRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVP 263          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.959e-87
Identity = 156/235 (66.38%), Postives = 181/235 (77.02%), Query Frame = 2
Query:   56 NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            NGGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP TFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKA +QIF EGGLDYLGNP+LIHA SILA+WA QVVLMG +EGYR+ GGPLGE  D +YP G+FDP GLADDPEA AEL+V+E +     +        + +VT +GP++N   H+A P   NA AY T   P
Sbjct:   31 NGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVP 263          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.959e-87
Identity = 157/204 (76.96%), Postives = 169/204 (82.84%), Query Frame = 2
Query:  149 PFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            PFSGEPPSYLTGEFPGDYGWDTAGLSADP TFAKNRELEVIH  WAMLGALGCVFPELL+RNGVKFGEAVWFKA +QIF EGGLDYLGNPSL+HA SILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YP GSFDP GLADDPEA AEL+V+E +     +        + +VT +GPL+N A HLA P N NA AY T   P
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 204          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 6.592e-87
Identity = 156/234 (66.67%), Postives = 181/234 (77.35%), Query Frame = 2
Query:   59 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            GGR++MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP TFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKA +QIF EGGLDYLGNP+LIHA SILAIWA QVVLMG VEGYR+ GGPLGE  D +YP G+FDP GLADDPEA AEL+V+E +     +        + +VT +GP++N + H+A P   NA AY T   P
Sbjct:    4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVP 235          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 8.609e-87
Identity = 165/254 (64.96%), Postives = 187/254 (73.62%), Query Frame = 2
Query:   14 GKTVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            G+T+ L P  NEL     +   RI+MR+T   +  S   WYGPDR KYLGPFS   PSYLTGEFPGDYGWDTA +SADP TFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKA AQIF EGGLDY GNP+LIHA SILAIWACQVVLMG +EGYR+ GG LGE  DPL P G+FDP GLADDPEA AEL+V+E +     +        + +VT +GP++N   HLA P   NA AY T   P
Sbjct:   14 GQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVP 264          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 1.124e-86
Identity = 160/248 (64.52%), Postives = 186/248 (75.00%), Query Frame = 2
Query:   32 APSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            AP  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP TFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKA AQIF EGGLDYLGNP+L+HA SILAIWA QVVLMG VEGYR+ GGPLGE  D +YP G+FDP GLADDP+  AEL+V+E +     +        + +VT +GP++N   H+A P   NA AY T   P
Sbjct:   16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVP 261          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 1.124e-86
Identity = 160/248 (64.52%), Postives = 186/248 (75.00%), Query Frame = 2
Query:   32 APSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            AP  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP TFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKA AQIF EGGLDYLGNP+L+HA SILAIWA QVVLMG VEGYR+ GGPLGE  D +YP G+FDP GLADDP+  AEL+V+E +     +        + +VT +GP++N   H+A P   NA AY T   P
Sbjct:   16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVP 261          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.469e-86
Identity = 158/233 (67.81%), Postives = 182/233 (78.11%), Query Frame = 2
Query:   62 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            GR SMR+T  K+V   S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADP TFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKA AQIF EGGLDYLGNP+L+HA SILAIWA QVVLMG +EGYR+ GGPLGE  DPLYP G+FDP GLADDPEA AEL+V+E +     +        + +VT +GP++N A H+A P   NA A+ T   P
Sbjct:   32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVP 262          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.243e-85
Identity = 155/234 (66.24%), Postives = 179/234 (76.50%), Query Frame = 2
Query:   59 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            GGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP TFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKA +QIF EGGLDYLGNP+LIHA SILAIWA QVVLMG VEGYR+ GGPLGE  D +YP G+FDP GLADDPEA AEL+V+E +     +        + +VT +GP++N   H+A P   NA A+ T   P
Sbjct:   32 GGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVP 263          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.374e-84
Identity = 154/232 (66.38%), Postives = 177/232 (76.29%), Query Frame = 2
Query:   65 RISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            R +MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP TFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKA +QIF EGGLDYLGNP+LIHA SILAIWA QVVLMG VEGYR+ GGPLGE  DPLYP G+FDP GLADDP++ AEL+V+E +     +        + +VT +GP++N   H+A P   NA A+ T   P
Sbjct:   34 RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVP 263          
The following BLAST results are available for this feature:
BLAST of EY664875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB24_SOLLC2.266e-8766.95Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC2.959e-8766.38Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB22_CUCSA2.959e-8776.96Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB25_SOLLC6.592e-8766.67Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_PINTH8.609e-8764.96Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_ORYSJ1.124e-8664.52Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.124e-8664.52Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_LEMGI1.469e-8667.81Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_PETSP1.243e-8566.24Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB215_PEA1.374e-8466.38Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664875 ID=EY664875; Name=EY664875; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGGCGGCAAGACTGTGAACCTTGCCCCTTCAGGCAATGAGC
TGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTT
TCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCC
ATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACT
ACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCATAAACCTTTGCCAAG
AACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCT
TGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTG
AGGCCGTGTGGTTCAAGGCGGNGGCCCAGATCTTCATCGAGGGCGGGCTT
GACTACTTGGGGAACCCAAGCCTGATCCACGCTCATAGCATCTTGGCCAT
CTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTG
CTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGTTGGCAGC
TTTGATCCATGGGGTTTGGCTGATGACCCGGAAGCTTTGGCTGAACTCAG
GGTAAGGGAATCAAGAATGGAAGGTTGGCTATTGTCTCCATGGTTGGTTT
CTTCGTTCAGGCCATTGGTAACGGCAAGGGGCCCGTTAAAGAACTTTGCC
CACCACCTGGCTGGACCTGGTAATTACAATGCCGGGGCCTACCCAACCAC
TTTGTCCCCGGAAGTGACCTTCCGGTGATAAAAATTTTCTCTTTCGGGTT
CTTGGATTAATGGAATTTGTGGGGACCCATGGAGCTTTATTTGAGTGGGG
TTATTATAAAAGCCCAATTGGACCTGGCTGGTTTTTGGCAAAAAAAAAAA
AGGCGGCGCTTTAAGGT
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