EY664875

Overview
NameEY664875
Unique NameEY664875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 305.064 bits (780), Expect = 3.743e-82
Identity = 145/177 (81.92%), Postives = 156/177 (88.14%), Query Frame = 2
Query:   56 NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEA 586
            NGGR+SMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP TFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKA +QIF EGGLDYLGNP+L+HA SILAIWACQVVLMGAVEGYR+ GGPLGE  D LYP G+FDP GLA+DPEA
Sbjct:   30 NGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEA 204          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 5.788e-75
Identity = 144/233 (61.80%), Postives = 174/233 (74.68%), Query Frame = 2
Query:   77 RKTGSKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSF-RPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            +KT +K+    SSG  +YGP+R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADP TF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKA AQIF EGGLDYLGNPSL+HA +I+A  A QV+LMG +EGYR+ GGP GE  DPLYP  SFDP GLADDP+  AEL+V+E +  G L S  +   F + +VT +GP++N   HLA P   NA A+ T  +P
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIK-NGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 9.873e-75
Identity = 140/221 (63.35%), Postives = 163/221 (73.76%), Query Frame = 2
Query:  101 SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            S+G  WYGPDR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADP TF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKA AQIF EGGLDYLG+P+LIHA +I+A  A QVVLMG +EGYR+ GGP GE  DPLYP  SFDP GLADDP+  AEL+V+E +     +        + +VT +GP++N A HLA PG  NA A  T  +P
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 5.990e-72
Identity = 151/248 (60.89%), Postives = 170/248 (68.55%), Query Frame = 2
Query:   17 KTVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA P TFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKA AQIF EGGLDYLGNPSL+HA SILAIW  +V+LMGAVEGYRIA GPLGEVTDPLYP GSFD  GLA+D EA AEL+V+E +     +        + +V+ +  L+N A HL    N NA +  T   P
Sbjct:   22 KPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVP 266          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 8.950e-68
Identity = 141/252 (55.95%), Postives = 166/252 (65.87%), Query Frame = 2
Query:   14 GKTVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPVGS-FDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            G+T N  P  + ++ G         ++   S   WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADP  FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKA +QIF +GGLDYLGNP+L+HA SILA+   QVVLMG VEG+RI G P +GE  D LYP G  FDP GLADDP   AEL+V+E +     +        + +VT +GPL+N   HL  P   NA  Y T   P
Sbjct:   21 GQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVP 263          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.604e-67
Identity = 135/229 (58.95%), Postives = 158/229 (69.00%), Query Frame = 2
Query:   83 TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPVGS-FDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            T  +       WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADP  FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKA +QIF EGGLDYLGNP+L+HA SILA+   QV+LMG VEG+RI G   +GE  D LYP G  FDP GLADDP   AEL+V+E +     +        + +VT +GPL+N   HL  P   NA  + T  +P
Sbjct:   39 TNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAP 266          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 7.841e-64
Identity = 129/221 (58.37%), Postives = 155/221 (70.14%), Query Frame = 2
Query:  116 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLG--EVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSPEV 766
            +YGPDR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKA AQIF +GGL+YLGN SLIHA SI+A  A QVVLMG  E YR  GG  G  +  D LYP G FDP GLADDP+  AEL+V+E +     +   L    + +VT +GP++N   HLA P    A A  T  +P V
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPGV 253          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.980e-63
Identity = 129/230 (56.09%), Postives = 157/230 (68.26%), Query Frame = 2
Query:   80 KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEA-VWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSPE 763
            K  SKS SS + +YGPD          + P   TGEFPGDYGWDTAGLSADP TF + RELE+IH R  +LGALG V PELLA  +G+KFG+A +WFKA A IF +GGL+YLGNPSLIHA +I+A  A QVVLMG VEGYR+ GGP GE  DPLYP  +FDP GLADDP+  AEL+V+E +     +   L    + +VT +GP++N   HLA P   NA AY T  +P+
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTPQ 273          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.910e-47
Identity = 94/148 (63.51%), Postives = 108/148 (72.97%), Query Frame = 2
Query:  317 ELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            ELL +NGVKFGEAVWFKA AQIF EGGLDYLGNP+LIHA SILAIWACQVVLMG +EGYR+ GGPLGE  DPLYP  +FDP GLADDPEA AEL+V+E +     +        + +VT +GP++N   HLA P   NA AY T   P
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVP 148          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.704e-34
Identity = 96/222 (43.24%), Postives = 120/222 (54.05%), Query Frame = 2
Query:   89 SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYN 730
            SK+VS  S     WYGPDR  +L        E P YL GE  GDYG+D  GL   P  FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK  A +     L+Y G    I  + +LA+ A +VVL+G  E YRI  G   +  D L+P G FDP GLA DPE  A L+V+E +     +   L    +  VT  GP++N A HL+ P   N
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
The following BLAST results are available for this feature:
BLAST of EY664875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB21_SILPR3.743e-8281.92Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_CHLRE5.788e-7561.80Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO9.873e-7563.35Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO5.990e-7260.89Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB23_SOLLC8.950e-6855.95Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU2.604e-6758.95Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE7.841e-6458.37Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA2.980e-6356.09Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY3.910e-4763.51Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH1.704e-3443.24Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664875 ID=EY664875; Name=EY664875; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGGCGGCAAGACTGTGAACCTTGCCCCTTCAGGCAATGAGC
TGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTT
TCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCC
ATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACT
ACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCATAAACCTTTGCCAAG
AACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCT
TGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTG
AGGCCGTGTGGTTCAAGGCGGNGGCCCAGATCTTCATCGAGGGCGGGCTT
GACTACTTGGGGAACCCAAGCCTGATCCACGCTCATAGCATCTTGGCCAT
CTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTG
CTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGTTGGCAGC
TTTGATCCATGGGGTTTGGCTGATGACCCGGAAGCTTTGGCTGAACTCAG
GGTAAGGGAATCAAGAATGGAAGGTTGGCTATTGTCTCCATGGTTGGTTT
CTTCGTTCAGGCCATTGGTAACGGCAAGGGGCCCGTTAAAGAACTTTGCC
CACCACCTGGCTGGACCTGGTAATTACAATGCCGGGGCCTACCCAACCAC
TTTGTCCCCGGAAGTGACCTTCCGGTGATAAAAATTTTCTCTTTCGGGTT
CTTGGATTAATGGAATTTGTGGGGACCCATGGAGCTTTATTTGAGTGGGG
TTATTATAAAAGCCCAATTGGACCTGGCTGGTTTTTGGCAAAAAAAAAAA
AGGCGGCGCTTTAAGGT
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