EY664875

Overview
NameEY664875
Unique NameEY664875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.884e-33
Identity = 72/114 (63.16%), Postives = 83/114 (72.81%), Query Frame = 2
Query:  419 SLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            SL+HA SILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYP GSFDP GLA+DPEA AEL+V+E +     +        + +VT +GPL+N A HLA P N NA +Y T   P
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVP 114          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.460e-33
Identity = 72/114 (63.16%), Postives = 83/114 (72.81%), Query Frame = 2
Query:  419 SLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            SL+HA SILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYP GSFDP GLA+DPEA AEL+V+E +     +        + +VT +GPL+N A HLA P N NA A+ T   P
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 263          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.460e-33
Identity = 72/114 (63.16%), Postives = 83/114 (72.81%), Query Frame = 2
Query:  419 SLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            SL+HA SILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYP GSFDP GLA+DPEA AEL+V+E +     +        + +VT +GPL+N A HLA P N NA A+ T   P
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 263          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.196e-33
Identity = 71/114 (62.28%), Postives = 83/114 (72.81%), Query Frame = 2
Query:  419 SLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            SL+HA SILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYP GSFDP GLA+DPEA AEL+V+E +     +        + +VT +GPL+N A H+A P N NA A+ T   P
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVP 265          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.196e-33
Identity = 71/114 (62.28%), Postives = 83/114 (72.81%), Query Frame = 2
Query:  419 SLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            SL+HA SILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYP GSFDP GLA+DPEA AEL+V+E +     +        + +VT +GPL+N A H+A P N NA A+ T   P
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVP 265          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.928e-31
Identity = 71/122 (58.20%), Postives = 83/122 (68.03%), Query Frame = 2
Query:  398 LDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAGAYPTTLSP 760
            LDYLGNPSL+HA SILAIWA QV+LMGAVEGYR+AG GPLGE  D LYP GSFDP     DPEA AEL+V+E +     +        + +VT +GPL+N A HLA P N NA A+ T   P
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 122          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.119e-20
Identity = 70/209 (33.49%), Postives = 101/209 (48.33%), Query Frame = 2
Query:  125 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPVGS-FDP--WGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGN 724
            PDR  +   F G  PP +L G  PGD+G+D  GL++DP +   N++ E++HCRWAMLGA G   PELL + G+      W+ A  Q +      +    +L     +L  WA       ++  G V    I        TD  YP G  FDP  WG +  P  + ELR +E +     +   + + F+ + T  GP+ N   HLA PG+
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG-SGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGH 260          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.074e-20
Identity = 73/198 (36.87%), Postives = 97/198 (48.99%), Query Frame = 2
Query:  158 GEP-PSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGG-LDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRE---SRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYNAG 736
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA     I GG   YLG P  +   ++  I A + + +  VE  R       +     YP G+FDP G + DP    EL+V+E    R+    +  + V     L T  GPL+N A HLA P + N G
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGT--GPLENLATHLADPWHNNIG 235          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.949e-20
Identity = 73/231 (31.60%), Postives = 106/231 (45.89%), Query Frame = 2
Query:   86 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLYPVGS-------------FDP--WGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGN 724
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DP +   N + E++H RWAMLGA G   PE L + GV      W+ A  Q +                     ++  ++VL+G  EG R A    P    TDP++P                FDP  WG +  P  + ELR +E +     +   + + F+ + T  GP+ N   HLA PG+
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEYFT---------------DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG-SGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGH 260          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.449e-19
Identity = 53/107 (49.53%), Postives = 68/107 (63.55%), Query Frame = 2
Query:  419 SLIHAHSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYN 730
            +LIHA S+LAI A QV+LMGAVEGYR    A G  GE  D LYP G FDP GLADDP+   EL+V+E +     +S  L    + +VT  GP++N+ +HL  P  +N
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHN 110          
The following BLAST results are available for this feature:
BLAST of EY664875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB2D_SOLLC1.884e-3363.16Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.460e-3363.16Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.460e-3363.16Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC4.196e-3362.28Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC4.196e-3362.28Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_RAPSA3.928e-3158.20Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB12_SOLLC3.119e-2033.49Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB11_SOLLC4.074e-2036.87Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_PETHY6.949e-2031.60Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_EUGGR3.449e-1949.53Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664875 ID=EY664875; Name=EY664875; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGGCGGCAAGACTGTGAACCTTGCCCCTTCAGGCAATGAGC
TGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTT
TCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCC
ATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACT
ACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCATAAACCTTTGCCAAG
AACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCT
TGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTG
AGGCCGTGTGGTTCAAGGCGGNGGCCCAGATCTTCATCGAGGGCGGGCTT
GACTACTTGGGGAACCCAAGCCTGATCCACGCTCATAGCATCTTGGCCAT
CTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTG
CTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGTTGGCAGC
TTTGATCCATGGGGTTTGGCTGATGACCCGGAAGCTTTGGCTGAACTCAG
GGTAAGGGAATCAAGAATGGAAGGTTGGCTATTGTCTCCATGGTTGGTTT
CTTCGTTCAGGCCATTGGTAACGGCAAGGGGCCCGTTAAAGAACTTTGCC
CACCACCTGGCTGGACCTGGTAATTACAATGCCGGGGCCTACCCAACCAC
TTTGTCCCCGGAAGTGACCTTCCGGTGATAAAAATTTTCTCTTTCGGGTT
CTTGGATTAATGGAATTTGTGGGGACCCATGGAGCTTTATTTGAGTGGGG
TTATTATAAAAGCCCAATTGGACCTGGCTGGTTTTTGGCAAAAAAAAAAA
AGGCGGCGCTTTAAGGT
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