EY664875

Overview
NameEY664875
Unique NameEY664875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.504e-19
Identity = 76/241 (31.54%), Postives = 109/241 (45.23%), Query Frame = 2
Query:   29 LAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFI-EGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSF---RPLVTARGPLKNFAHHLAGPGNYNAG 736
            LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  P  F + +E E+ HCRWAML   G + PE L       G   W KA     + +G   YLGNP  +   ++  I A + + +   E  R       +     YP G+FDP G + DP    EL+++E  ++   L+      F   +      GPL+N A HLA P + N G
Sbjct:   19 LAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLKE--IKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 234          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 64/191 (33.51%), Postives = 88/191 (46.07%), Query Frame = 2
Query:  155 SGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGG---PLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGP 718
            + EPP+ LTGE+P D G+D   L+ADP  +A+ R  EV H R AML  +GC+ PELL       G+  WF+A     ++G                L +    + +    E +R  GG     GE+ D  YP   FDP  L  D    AE  V+  R+    L+     + + L T   PL N + HLA P
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDS--VDG----------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYP--GFDPLNLTTDYTRAAE--VKNGRL---ALTAVAGLTAQYLATGESPLANLSAHLANP 350          

HSP 2 Score: 76.6406 bits (187), Expect = 2.165e-13
Identity = 58/157 (36.94%), Postives = 76/157 (48.41%), Query Frame = 2
Query:  164 PPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEG 625
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF+   ++      D+          +  A+ A QVV    +E +R  GG L    E  D  YP   FDP  L  +    AE++     M G
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQIWDKV------DF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYP--GFDPLNLTTEYTKEAEIKNGRLAMNG 509          

HSP 3 Score: 68.9366 bits (167), Expect = 4.515e-11
Identity = 60/185 (32.43%), Postives = 83/185 (44.86%), Query Frame = 2
Query:  167 PSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDPLYPVGSFDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGP 718
            PS+L GE+ GD G+D AGL+ADP TF + R  EV H R AML  +G + P+ L       G+ +W++A     I  GL                    +V +  A  G + +A G + E +DP      FDP  L  D    AE  ++  R+    L+  L    +  V    PL N A HL  P
Sbjct:   12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQNAGI--GLK-------------------EVAIFTAAYGVFEVARG-VKENSDPTTIYPGFDPLNLTTDYTKEAE--IKNGRL---ALTALLGFEVQRHVVGGSPLANLAEHLQQP 162          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.824e-13
Identity = 74/259 (28.57%), Postives = 110/259 (42.47%), Query Frame = 2
Query:   77 RKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGL------------SADP*TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSF-DPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGP 718
            +K+  K+V++  P + P  +          P +L G   GDYG+D  GL            S D    AKN                                RE E+IH RWAML  LG +  E L   GV + +A       ++ +  G  YLG P      +++ I   +V+++G +E  R A     +    LYP G F DP GLA DPE  A+L++ E +     +  +L  + +   T +GPL N+A HL+ P
Sbjct:   44 KKSAKKTVTTDRPLWYPGAIS---------PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQ-NLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLT--GVTWQDA------GKVELVDGSSYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDP 278          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.824e-13
Identity = 76/251 (30.28%), Postives = 109/251 (43.43%), Query Frame = 2
Query:   59 GGRISMRKTGSKSV---SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*T--FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPLYPVGS-FDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYN 730
            G RIS   T   S    ++ +P       + L   S +  SYL G  PGD+G+D  GLS    T  F + + L   EVI+ R+AMLGA G + PE+L + G+   E    WF+    I   G  +Y  +           ++  ++ LMG  E  R                     LG   DP YP G  F+P G   D +++ EL+++E +     +   L    + LVT  GP +N   HLA P N N
Sbjct:   24 GSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.833e-12
Identity = 68/211 (32.23%), Postives = 97/211 (45.97%), Query Frame = 2
Query:  170 SYLTGEFPGDYGWDTAGLSADP*T--FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAG----GPLGE------------VTDPLYPVGS-FDPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGPGNYN 730
            SYL G  PGDYG+D  GLS    T  F + R L   EVI+ R+AMLGA+G + PE L + G+   E    WF+    I   G  +Y  +           ++  ++ LMG  E  R       G +G+              +P YP G  F+P G   D ++L EL+++E +     +   L    + LVT  GP +N   H+A P N N
Sbjct:   66 SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of EY664875 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.083e-12
Identity = 74/255 (29.02%), Postives = 106/255 (41.57%), Query Frame = 2
Query:   89 SKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGL------------SADP*TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFIEGGLDYLGNPSLIHAHSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPVGSF-DPWGLADDPEALAELRVRESRMEGWLLSPWLVSSFRPLVTARGPLKNFAHHLAGP 718
            +K+V S  P + P           + P YL G   GDYG+D  GL            S D    AKN                                RE E+IH RWAML  LG +  E L   GV + +A       ++ +  G  YLG P      +++ I   +V+++G +E  R A     +    LYP G F DP GLA DP   A+L++ E +     +  +L  + +   T +GPL N+A HL+ P
Sbjct:   45 AKTVISDRPLWFP---------GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQ-NLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLT--GVTWQDA------GKVELVDGSSYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDP 275          
The following BLAST results are available for this feature:
BLAST of EY664875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB121_HORVU4.504e-1931.54Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
LH18_EUGGR7.442e-1433.51Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4A_ARATH4.824e-1328.57Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB13_SOLLC4.824e-1330.28Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.833e-1232.23Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4B_ARATH4.083e-1229.02Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664875 ID=EY664875; Name=EY664875; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGGCGGCAAGACTGTGAACCTTGCCCCTTCAGGCAATGAGC
TGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTT
TCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCC
ATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACT
ACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCATAAACCTTTGCCAAG
AACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCT
TGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTG
AGGCCGTGTGGTTCAAGGCGGNGGCCCAGATCTTCATCGAGGGCGGGCTT
GACTACTTGGGGAACCCAAGCCTGATCCACGCTCATAGCATCTTGGCCAT
CTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTG
CTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGTTGGCAGC
TTTGATCCATGGGGTTTGGCTGATGACCCGGAAGCTTTGGCTGAACTCAG
GGTAAGGGAATCAAGAATGGAAGGTTGGCTATTGTCTCCATGGTTGGTTT
CTTCGTTCAGGCCATTGGTAACGGCAAGGGGCCCGTTAAAGAACTTTGCC
CACCACCTGGCTGGACCTGGTAATTACAATGCCGGGGCCTACCCAACCAC
TTTGTCCCCGGAAGTGACCTTCCGGTGATAAAAATTTTCTCTTTCGGGTT
CTTGGATTAATGGAATTTGTGGGGACCCATGGAGCTTTATTTGAGTGGGG
TTATTATAAAAGCCCAATTGGACCTGGCTGGTTTTTGGCAAAAAAAAAAA
AGGCGGCGCTTTAAGGT
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