EY664869

Overview
NameEY664869
Unique NameEY664869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:282..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.661e-23
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 2
Query:   26 DDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTV-DQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            DD  ILDA EEAGLDLP SCRAG+CS+C GK+VSG   +Q +Q+FLDDDQ+  G+V+TC AYPT D TI TH+E E+
Sbjct:   23 DDQTILDAGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.038e-22
Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 2
Query:   26 DDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 256
            ++T ILD AEE G++LP+SC +G+CSSC GKVV G VDQS+Q FLDD+Q+G+GF L C  YP S+ TI+TH+E  LA
Sbjct:   23 EETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSNCTIKTHQEPYLA 99          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 5.153e-22
Identity = 45/76 (59.21%), Postives = 60/76 (78.95%), Query Frame = 2
Query:   26 DDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            +DT +L+AAEEA LDLP+SC +GACSSC GKVV G ++Q +Q+FLD++Q+ +GFVL C  YP +D TI TH+E  L
Sbjct:   23 EDTTVLEAAEEAELDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYPRTDCTIRTHQEAYL 98          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = 2
Query:   23 PDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            P +  I  A+E+A  DLP SC+AGACS+C GK+VSGTVDQSE SFLDD+Q+ +G+VLTC A P SDV IETHKE+EL
Sbjct:   19 PGERLIDIASEKA--DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.958e-21
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 2
Query:   23 PDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            P +  I   +E+A  DLP SC+AGACS+C GK+VSGTVDQSE SFLDD+Q+ +G+VLTC A P SDV IETHKE+EL
Sbjct:   19 PGERLIDIGSEKA--DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.558e-21
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   26 DDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            +DT IL+ A E G++LP+SC +G+CSSC GKVV G VDQS+Q FLDD+QM +GF L C  YP S+ TI+TH+E  L
Sbjct:   23 EDTTILEGAAENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.340e-21
Identity = 44/76 (57.89%), Postives = 60/76 (78.95%), Query Frame = 2
Query:   26 DDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            ++T ILDAAE+  ++LP+SC++G+CSSC  KVV G VDQSEQ FLD++QM +GF++ C +YP SD TI TH+E  L
Sbjct:   23 ENTTILDAAEQQDIELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQEPYL 98          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.833e-19
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   26 DDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            +D  IL++AE AGL+LPYSCR+G C +C GK+VSG VDQS  SFL+++Q+ +G++LTC A P  D  + THK+ +L
Sbjct:   72 EDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 2
Query:   29 DTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            D  +LD+A+ AG+DLP SC  G C++C  +++SG VDQ +   +  +   +G+ L C AYP SD+ IETHKE+EL
Sbjct:   22 DQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDEL 96          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: PAAE_ECOLI (Probable phenylacetic acid degradation NADH oxidoreductase paaE OS=Escherichia coli (strain K12) GN=paaE PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 2
Query:   26 DDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYP-TSDVTIE 232
            DD  ILDAA   G DLPY+C+ G C++C  KV+ G V       L+ D++  G+VL+C A P TSDV ++
Sbjct:  280 DDESILDAALRQGADLPYACKGGVCATCKCKVLRGKVAMETNYSLEPDELAAGYVLSCQALPLTSDVVVD 349          
The following BLAST results are available for this feature:
BLAST of EY664869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER2_APHSA4.661e-2364.94Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FERH_ANAVT1.038e-2261.04Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FER2_PLEBO5.153e-2259.21Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FER2_EQUTE6.731e-2266.23Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1[more]
FER2_EQUAR1.958e-2164.94Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FERH_FREDI2.558e-2159.21Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FERV_ANAVT3.340e-2157.89Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FER4_ARATH1.833e-1953.95Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]
FER2_SYNP62.097e-1546.67Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]
PAAE_ECOLI5.345e-1145.71Probable phenylacetic acid degradation NADH oxidor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-D07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664869 ID=EY664869; Name=EY664869; organism=Citrus sinensis; type=EST; length=557bp
CCACGCGTCCGGAAATAACTGTCCTGATGACACGTTTATTCTTGATGCTG
CTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGC
TCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCA
AAGCTTTCTGGATGATGATCAAATGGGAGAAGGTTTTGTTCTCACTTGTG
CTGCTTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAG
CTCGCTGGTTAATAATGTGCTCTTGATATCTCATTATTATCTTCTCTTTT
ATGTGTTGTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAG
TAATTTGAGAATGATTCTTGTAATGTGTTTTTATTTCTTGTTGCAAAGAA
GTTGTAATTGCACCGGCCATGAATGCGCATCGTACCTAGAGGGTGAGGTT
TCTCATCCCATCCGAACATGGTACCGTTCTATAATTAAGAGTCAAGCAAG
AACAATGGATCTTTCGTTGTATTTCATCGGTAAAAAAAAAAAAAAAAAAA
AAAAAAA
back to top