EY664869

Overview
NameEY664869
Unique NameEY664869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:282..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 2
Query:   23 PDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            PDD +ILDAAEEAG+DLPYSCRAGACS+C GK+  G VDQS+ SFL+D    +G+VLTC AYP SD+ I THKEEEL
Sbjct:   21 PDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.022e-26
Identity = 54/77 (70.13%), Postives = 65/77 (84.42%), Query Frame = 2
Query:   23 PDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQ+ +GFVLTC AYP SD  I T++EEEL
Sbjct:   21 PEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.022e-26
Identity = 54/77 (70.13%), Postives = 65/77 (84.42%), Query Frame = 2
Query:   23 PDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQ+ +GFVLTC AYP SD  I T++EEEL
Sbjct:   21 PEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.022e-26
Identity = 54/77 (70.13%), Postives = 65/77 (84.42%), Query Frame = 2
Query:   23 PDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQ+ +GFVLTC AYP SD  I T++EEEL
Sbjct:   21 PEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.641e-26
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 2
Query:   17 NCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            + PDD +ILDAAE AG++LPYSCRAGACS+C GK+ SG+VDQS+ SFLDD Q  EG+VLTC +YP SD  I THKE +L
Sbjct:   73 DAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.449e-26
Identity = 52/76 (68.42%), Postives = 65/76 (85.53%), Query Frame = 2
Query:   26 DDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            + T++LD+AE+ G+DLPYSCRAGACS+C G V  GTVDQS+QSFLDDDQ+ + FVLTC AYPTSD  I+TH+EE+L
Sbjct:   21 ETTYVLDSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEKL 96          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.449e-26
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 2
Query:   26 DDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            DD +ILDAAEEAG+DLPYSCRAGACS+C G++VSG VDQS+ SFL+D  + +G+VLTC AYP SD  I THKE EL
Sbjct:   79 DDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER_PHYPA (Ferredoxin, chloroplastic OS=Physcomitrella patens GN=PETF PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.883e-26
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 2
Query:   20 CPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            C D+ + LDAAE AG+DLPYSCRAGACSSC G + +G VDQS+QSFLDD Q+ +GFVLTC AYP SD  I TH+EE +
Sbjct:   68 CSDEEYXLDAAERAGMDLPYSCRAGACSSCAGIIKAGEVDQSDQSFLDDSQIDDGFVLTCVAYPASDCIIXTHQEENM 145          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.712e-25
Identity = 50/77 (64.94%), Postives = 65/77 (84.42%), Query Frame = 2
Query:   23 PDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            PDDT+IL+AAE AG++LP+SCRAG+CS+C G++ +G VDQSE SFLDD QM EG++LTC +YP +D  I THKEE+L
Sbjct:   78 PDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 3.569e-23
Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 2
Query:   26 DDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 256
            ++T ILD AEE G++LP+SC +G+CSSC GKVV G VDQS+Q FLDD+QMG+GF L C  YP S+ TI+TH+E  LA
Sbjct:   23 EETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYLA 99          
The following BLAST results are available for this feature:
BLAST of EY664869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER1_RAPSA9.075e-2770.13Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER_THEVL2.022e-2670.13Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB2.022e-2670.13Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]
FER_SYNEN2.022e-2670.13Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER3_MAIZE2.641e-2667.09Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER_RHOPL3.449e-2668.42Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER3_ARATH3.449e-2669.74Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER_PHYPA5.883e-2666.67Ferredoxin, chloroplastic OS=Physcomitrella patens... [more]
FER6_MAIZE1.712e-2564.94Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FERH_ANASP3.569e-2362.34Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-D07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664869 ID=EY664869; Name=EY664869; organism=Citrus sinensis; type=EST; length=557bp
CCACGCGTCCGGAAATAACTGTCCTGATGACACGTTTATTCTTGATGCTG
CTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGC
TCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCA
AAGCTTTCTGGATGATGATCAAATGGGAGAAGGTTTTGTTCTCACTTGTG
CTGCTTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAG
CTCGCTGGTTAATAATGTGCTCTTGATATCTCATTATTATCTTCTCTTTT
ATGTGTTGTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAG
TAATTTGAGAATGATTCTTGTAATGTGTTTTTATTTCTTGTTGCAAAGAA
GTTGTAATTGCACCGGCCATGAATGCGCATCGTACCTAGAGGGTGAGGTT
TCTCATCCCATCCGAACATGGTACCGTTCTATAATTAAGAGTCAAGCAAG
AACAATGGATCTTTCGTTGTATTTCATCGGTAAAAAAAAAAAAAAAAAAA
AAAAAAA
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