EY664860

Overview
NameEY664860
Unique NameEY664860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664860 vs. ExPASy Swiss-Prot
Match: PSAD_THEEB (Photosystem I reaction center subunit II OS=Thermosynechococcus elongatus (strain BP-1) GN=psaD PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 5.726e-40
Identity = 79/130 (60.77%), Postives = 98/130 (75.38%), Query Frame = 1
Query:  322 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 708
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MR+G NL+  ARKEQCLAL   +LR +    Y+ YR+FP+GE   +HPKDGV+PEKVN GR+ V    RSIG+N +P ++KFTGK+ YD
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 138          
BLAST of EY664860 vs. ExPASy Swiss-Prot
Match: PSAD_SYNEN (Photosystem I reaction center subunit II OS=Synechococcus elongatus naegeli GN=psaD PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 5.726e-40
Identity = 79/130 (60.77%), Postives = 98/130 (75.38%), Query Frame = 1
Query:  322 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 708
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MR+G NL+  ARKEQCLAL   +LR +    Y+ YR+FP+GE   +HPKDGV+PEKVN GR+ V    RSIG+N +P ++KFTGK+ YD
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 138          
BLAST of EY664860 vs. ExPASy Swiss-Prot
Match: PSAD_ANAVT (Photosystem I reaction center subunit II OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaD PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 1.276e-39
Identity = 80/131 (61.07%), Postives = 100/131 (76.34%), Query Frame = 1
Query:  319 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 708
            +P+F GSTGGLL KA  EE Y ITW SPK Q+FE+PTGGAA M +G NLL +ARKE  +ALG +LR K+KI  Y+ YR+ P+GE  ++HP DGV+PEKVNPGR+ V  N RSIG+N +P +VKF+GK  YD
Sbjct:    9 TPLFAGSTGGLLTKAVEEEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIALGGQLR-KFKITNYKIYRILPSGETTFIHPADGVFPEKVNPGREKVRFNARSIGENPNPSQVKFSGKATYD 138          
BLAST of EY664860 vs. ExPASy Swiss-Prot
Match: PSAD_ANASP (Photosystem I reaction center subunit II OS=Anabaena sp. (strain PCC 7120) GN=psaD PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.080e-38
Identity = 79/131 (60.31%), Postives = 99/131 (75.57%), Query Frame = 1
Query:  319 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 708
            +P+F GSTGGLL KA  EE Y ITW SPK Q+FE+PTGGAA M +G NLL +ARKE  +ALG +LR K+KI  Y+ YR+ P+GE  ++HP DGV+PEKVN GR+ V  N RSIG+N +P +VKF+GK  YD
Sbjct:    9 TPLFAGSTGGLLTKAVEEEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIALGGQLR-KFKITNYKIYRILPSGETTFIHPADGVFPEKVNAGREKVRFNARSIGENPNPSQVKFSGKATYD 138          
BLAST of EY664860 vs. ExPASy Swiss-Prot
Match: PSAD_FREDI (Photosystem I reaction center subunit II OS=Fremyella diplosiphon GN=psaD PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.359e-38
Identity = 79/131 (60.31%), Postives = 98/131 (74.81%), Query Frame = 1
Query:  319 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 708
            +P+F GSTGGLL+KA+VEE Y ITW SPK Q+FE+PTGGAA M+QG NLL LARKE  +ALG +LR K+KI  Y+ YR+ P GE   +HP DGV+PEKVN GR+ V    R IG+N +P  +KF+GK  YD
Sbjct:    8 TPLFAGSTGGLLKKAEVEEKYAITWTSPKAQVFELPTGGAATMQQGQNLLYLARKEYGIALGGQLR-KFKITDYKIYRILPGGETTLIHPADGVFPEKVNAGREKVRFVPRRIGENPNPSAIKFSGKYTYD 137          
BLAST of EY664860 vs. ExPASy Swiss-Prot
Match: PSAD_GLOVI (Photosystem I reaction center subunit II OS=Gloeobacter violaceus GN=psaD PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.999e-38
Identity = 79/132 (59.85%), Postives = 99/132 (75.00%), Query Frame = 1
Query:  319 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYDL 711
            +P+FGGSTGGLLRKAQ+EE Y+I W S +EQ+FEMPTGGAA M  G N+L LARKEQC AL  +L S +KI+  + YRV+PNGE   + P DGV  EK NPGR+ VG   R IG N +P++VKFTGK+ +D+
Sbjct:   13 TPLFGGSTGGLLRKAQIEEKYLIVWNSKEEQVFEMPTGGAATMVAGTNVLYLARKEQCHALHRQLVSTFKIRDSKIYRVYPNGEQVLIFPMDGVPSEKSNPGREVVGYVPRKIGDNPNPVDVKFTGKETFDV 144          
The following BLAST results are available for this feature:
BLAST of EY664860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_THEEB5.726e-4060.77Photosystem I reaction center subunit II OS=Thermo... [more]
PSAD_SYNEN5.726e-4060.77Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_ANAVT1.276e-3961.07Photosystem I reaction center subunit II OS=Anabae... [more]
PSAD_ANASP1.080e-3860.31Photosystem I reaction center subunit II OS=Anabae... [more]
PSAD_FREDI5.359e-3860.31Photosystem I reaction center subunit II OS=Fremye... [more]
PSAD_GLOVI6.999e-3859.85Photosystem I reaction center subunit II OS=Gloeob... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664860 ID=EY664860; Name=EY664860; organism=Citrus sinensis; type=EST; length=887bp
CCACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGTAACTCCAAGACACA
TCTTCCCCTGCTAACTCGAAAATCTACAATTTCCATGGCAACCCAAGCAG
GCCTCTTTACCCCAAGTATTATCACCACCAAAACAAGCAAGCTTCTTTTG
AACCCATGGAAGCCAACCTCATCCTTTTCATTCACCAGTCCCAAACCCCT
CACCTTCTCCATGGCTCAAAGAACCGTCAGAGCCGCAGCCGCCGAAGAAA
AAACCGAAGCACCCACGAAGGAGGCTCCAGTAGGCTTCACCCCACCGCAG
CTAGACCCAAACACCCCATCCCCAATCTTCGGAGGAAGCACTGGGGGATT
GTTGAGAAAGGCCCAAGTTGAAGAATTCTATGTCATCACATGGGAGTCGC
CAAAGGAACAAATCTTTGAGATGCCGACTGGTGGAGCTGCCATTATGAGG
CAAGGTCCTAACTTGCTTAAGTTGGCTAGGAAAGAACAGTGCTTGGCTCT
TGGTACTAGATTGAGATCAAAGTACAAGATCAAGTACCAGTTTTACAGGG
TCTTTCCTAATGGTGAGGTTCAATATCTTCACCCCAAGGATGGAGTTTAT
CCTGAAAAAGTGAACCCTGGTCGCCAGGGAGTGGGAGTGAATTACAGATC
AATTGGGAAGAATGTCAGTCCCATCGAGGTTAAGTTCACTGGGAAGCAAG
TCTATGACTTGTGAGATGCAGATGATTGGTTAATCTCTTGGTTTGTGTGA
TGGNAGATNCTACTGGTCTTTTACTTTCTTTNNTAAATGGATCTTTAAAA
TATTTTCAGGTGCTAACTGTNCCCTAAACTATGCTTACTCGATCGATTNN
CTTTATACAGCACAAACAGAAACTGAAAAATNCACAA
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