CX672563

Overview
NameCX672563
Unique NameCX672563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672563 vs. ExPASy Swiss-Prot
Match: NIP12_ARATH (Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 56/205 (27.32%), Postives = 90/205 (43.90%), Query Frame = 3
Query:  183 PLFEPGELSSWS--FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSL 791
            PL +   L S S  F +  +AE + T+ FL       + V+    K  T  + GIA  +G  +  LVY    ISG H NPAVT       +  L +   Y+I Q +G+   AA ++       ++  G  ++       G  L + ++   +  Y +F  +    + R   +  LA L +G  V L  +   P++G  +NP RSL
Sbjct:   36 PLKKQDSLLSISVPFLQKLMAEVLGTY-FLIFAGCAAVAVNTQHDKAVT--LPGIAIVWGLTVMVLVYSLGHISGAHFNPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDQDVCSGKHDVFVGTLPSGSNLQSFVIEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVIIAGPVSGASMNPGRSL 235          
BLAST of CX672563 vs. ExPASy Swiss-Prot
Match: NIP11_ORYSJ (Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 56/188 (29.79%), Postives = 83/188 (44.15%), Query Frame = 3
Query:  234 IAEFVATFLFLYITVLTVMG-VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSL 791
            I + +A     Y  +    G V+ ++SK   +   G+A  +G  +  +VY    ISG H NPAVT      R+    +   Y   Q LGA   A  ++     ++E   G    L  G S    L  E + TF L++ +   ATD +       +  LA L +G  + L  L   PI+G  +NPARSL
Sbjct:   47 IQKIIAEIFGTYFLIFAGCGAVTINQSKNGQITFPGVAIVWGLAVMVMVYAVGHISGAHFNPAVTLAFATCRRFPWRQVPAYAAAQMLGATLAAGTLRLMFGGRHEHFPG---TLPAG-SDVQSLVLEFIITFYLMFVISGVATDNRA------IGELAGLAVGATILLNVLIAGPISGASMNPARSL 224          
BLAST of CX672563 vs. ExPASy Swiss-Prot
Match: NIP31_MAIZE (Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 53/186 (28.49%), Postives = 81/186 (43.55%), Query Frame = 3
Query:  237 AEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSL 791
            AEFV TF+ ++      +   K     S  G    A   G  +  ++  T  ISG H+NP++T      R     +   Y+ +Q L ++C A  +KG     +  L GG  +     S       E + +F L++ V + ATD +       V  LA + +G AV L  L   P TG  +NP R+L
Sbjct:   78 AEFVGTFILIFFATAAPIVNQKYGGAISPFGNAACA---GLAVATVILSTGHISGAHLNPSLTIAFAALRHFPWLQVPAYVAVQALASVCAAFALKGV---FHPFLSGGVTVPDATVSTAQAFFTEFIISFNLLFVVTAVATDTRA------VGELAGIAVGAAVTLNILVAGPTTGGSMNPVRTL 251          
BLAST of CX672563 vs. ExPASy Swiss-Prot
Match: GLPF_STRR6 (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=glpF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 56/191 (29.32%), Postives = 88/191 (46.07%), Query Frame = 3
Query:  240 EFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKG-------DGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSL 791
            EF+ T + + +    V GV   K+K ++ G   I   +G  +   V+ +  +S  H+NPAVT G+ L   L     + Y++ Q  GA+ G  +V    K  YE      N+L+  +S G         L +EI+GTFVLV T+F+       A       +    +G  +  + L+    TG  +NPAR L
Sbjct:    8 EFLGTLILILLGNGVVAGVVLPKTKSNSSGWIVITMGWGIAVAVAVFVSGKLSPAHLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQILVWLQFKPHYEAEENAGNILAT-FSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAG------IGTFAVGTLIVGIGLSLGGTTGYALNPARDL 191          
The following BLAST results are available for this feature:
BLAST of CX672563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
NIP12_ARATH6.056e-1127.32Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2... [more]
NIP11_ORYSJ6.056e-1129.79Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica G... [more]
NIP31_MAIZE7.909e-1128.49Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1[more]
GLPF_STRR67.909e-1129.32Glycerol uptake facilitator protein OS=Streptococc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17G03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17G03-M5-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672563 ID=CX672563; Name=CX672563; organism=Citrus sinensis; type=EST; length=793bp
TATTGATTCAATTCACTCCCAAGAAACTTGAACCTATCTTGTCTATTAAT
TTTCACAAGAACATAATGGAGGGCAAAGAAGAGGATGTAAGAGTGGGAGC
AAATAGGTATCGAGAGAGTCAACCTATTGGAACCGCGGCTCAGACTCAGG
ATGTGAAGGATTACACGGAGCCACCTCCGGCGCCGCTCTTCGAGCCCGGC
GAATTATCGTCGTGGTCCTTTTACAGGGCTGGCATTGCGGAGTTTGTGGC
CACGTTCTTGTTTCTTTACATCACTGTTCTAACAGTGATGGGCGTGTCCA
AATCCAAAAGCAAATGTTCCACTGTGGGAATCCAGGGCATCGCTTGGGCT
TTTGGCGGCATGATCTTCGCTCTAGTCTACTGCACTGCTGGCATTTCAGG
GGGTCACATTAACCCAGCGGTGACATTCGGGCTGTTCTTGGCCCGAAAGC
TGTCGCTTACCAGGGCAGTTTTTTACATGATAATGCAGTGTTTAGGGGCC
ATATGCGGTGCGGCCGTTGTAAAGGGCTTTCAGAAAAGCCAATATGAAAT
GCTAGGCGGCGGTGCCAACATGCTCAGCAAAGGCTACAGCAAGGGAGATG
GCCTTGGAGCCGAGATTGTTGGTACCTTTGTTCTTGTTTACACTGTCTTC
TCGGCCACTGATGCCAAGCGCAATGCCCGCGATTCTCATGTTCCTATATT
GGCACCCCTGCCCATTGGATTTGCTGTGTTTTTGGTGCACTTGGCAACAA
TTCCTATCACAGGAACAGGCATTAACCCAGCAAGGAGTCTTGG
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