CX672559

Overview
NameCX672559
Unique NameCX672559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672559 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.037e-23
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = -2
Query:  302 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 580
            ++P   GE +I C ++ T+P+V+  +G K++ LS E Y LK  +G   +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD  + R+G A+A
Sbjct:  315 AVPLIQGEYMIPCEKVSTLPDVTLKLGGKLYKLSSEDYTLKVSQGGKTICLSGFMGMDIPPPGGPLWILGDVFIGCYYTVFDRDQNRVGLAQA 407          
BLAST of CX672559 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.345e-22
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = -2
Query:  299 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 580
            ++P   GE +I C ++ ++P ++F +G + + L PE+YILK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFA+AA
Sbjct:  312 AVPLIQGEYMIPCEKVSSLPIITFKLGGQNYELHPEKYILKVSQAGKTICLSGFMGMDIPPPSGPLWILGDVFIGCYYTVFDREYNRVGFAKAA 405          
BLAST of CX672559 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.345e-22
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = -2
Query:  299 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 580
            ++P   GE +I C ++ ++P V+  +G K + LSPE Y LK  +    VC+SGFM  D+PPP GPLWILGDVF+G Y+TVFD  + R+G AEAA
Sbjct:  295 AVPLIQGEYMIPCEKVSSLPEVTVKLGGKDYALSPEDYALKVSQAETTVCLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDQNRVGLAEAA 388          
BLAST of CX672559 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.756e-22
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = -2
Query:  302 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 580
            ++P   GE +I C ++ ++P V   +G K + L P++YILK  +G   +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFA A
Sbjct:  315 AVPLIQGEYMIPCEKVSSLPTVYLKLGGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGSYYTVFDRDNNRVGFANA 407          
BLAST of CX672559 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.644e-20
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = -2
Query:  308 VLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIA-EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 610
            V+  I      +P   GE  ++C +IP++PN++F +G + F+L  + YIL+   G     C+SGFM  D+P P GPLWILGDVF+G +++VFD G  R+GFA
Sbjct:  291 VIKKIQHKIGGIPLFNGEYEVECSKIPSLPNITFNLGGQNFDLQGKDYILQMSNGNGGSTCLSGFMGMDIPAPAGPLWILGDVFIGRFYSVFDHGNKRVGFA 392          
BLAST of CX672559 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.818e-19
Identity = 46/96 (47.92%), Postives = 59/96 (61.46%), Query Frame = -2
Query:  302 LPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKL----RIGFAEA 577
            +P   GE II C  IP +P VSF +G   FNL+   Y+++T      +C+SGF A D+PPP GP WILGDVF+G Y  VFD G +    R+G A A
Sbjct:  306 IPLLAGEYIILCSEIPKLPAVSFLLGGVWFNLTAHDYVIQTTRNGVRLCLSGFQALDVPPPAGPFWILGDVFLGTYVAVFDRGDMKSSARVGLARA 401          
BLAST of CX672559 vs. ExPASy Swiss-Prot
Match: CATE_RANCA (Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.818e-19
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = -2
Query:  308 EKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 616
            E++ +YI      + N  GE  + C  +  MP+V+FTI    ++L+PEQY+L+ G G    C SGF   D+ PP GPLWILGDVF+G Y++VFD G  R+GFA
Sbjct:  291 EQLQNYIG-----VTNTNGEYGVSCSTLSLMPSVTFTINGLDYSLTPEQYMLEDGGGY---CSSGFQGLDISPPSGPLWILGDVFIGQYYSVFDRGNNRVGFA 385          
BLAST of CX672559 vs. ExPASy Swiss-Prot
Match: CATEA_XENLA (Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = -2
Query:  308 GESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 562
            G+  +DC  +  MP V+FTI    + ++P+QY L+ G G   VC SGF   D+PPP GPLWILGDVF+G Y++VFD G  R+G A
Sbjct:  304 GDYEVDCSVLNEMPTVTFTINGIGYQMTPQQYTLQDGGG---VCSSGFQGLDIPPPAGPLWILGDVFIGQYYSVFDRGNNRVGLA 385          
BLAST of CX672559 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 50/138 (36.23%), Postives = 76/138 (55.07%), Query Frame = -2
Query:  305 VEKENVSAGDSAVCSACEMTVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 718
            ++  +V+ G +     CE  +V     L    TKE  +  +     + P   G+ +I C +I ++P V+  +G K + L+ EQY+ K       +C+SGF   D+PPP GPLWILGDVF+G Y+TVFD     +GFA+
Sbjct:  262 MDSVDVANGLTLCKGGCE-AIVDTGTSLITGPTKE--VKELQTAIGAKPLIKGQYVISCDKISSLPVVTLMLGGKPYQLTGEQYVFKVSAQGETICLSGFSGLDVPPPGGPLWILGDVFIGPYYTVFDRDNDSVGFAK 396          
BLAST of CX672559 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.637e-18
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  314 INELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIG 598
            +N+     P   G+  I C + PT+P VSF +G   FNL+ + Y++K  +    +C+ GF A D+P P GPLWILGDVF+G Y  VFD G   +G
Sbjct:  294 LNKAIGGYPFLNGQYFIQCSKTPTLPPVSFHLGGVWFNLTGQDYVIKILQSDVGLCLLGFQALDIPKPAGPLWILGDVFLGPYVAVFDRGDKNVG 388          
The following BLAST results are available for this feature:
BLAST of CX672559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CATD_CANFA6.037e-2349.46Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]
CATD_RAT1.345e-2248.94Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_BOVIN1.345e-2251.06Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
CATD_MOUSE1.756e-2249.46Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
ASP3_CAEEL1.644e-2044.12Aspartic protease 3 OS=Caenorhabditis elegans GN=a... [more]
NAPSA_HUMAN1.818e-1947.92Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CATE_RANCA1.818e-1946.60Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1[more]
CATEA_XENLA1.178e-1850.59Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=... [more]
CATD_CHICK1.539e-1836.23Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
NAPSA_MOUSE7.637e-1843.16Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17G01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17G01-M1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672559 ID=CX672559; Name=CX672559; organism=Citrus sinensis; type=EST; length=731bp
TTTAAAGGAAAAAACGAAGTCCAATGACAGTTATAAGATGAAATTTCTCC
AAATAAGTAAAGCTATCACGTCAGAATATCATAAAATTGAAGTACTTTAA
ACATAGGATGATAGGATTTTACATAAGTATATATCAGCATATCATCTGTG
GTGATGATGATGATAGTTATGCATAAAAGCATACTGATCGTTTTACAGTA
CATGAAAACCATAATCTACATTCTACAACCCTCCTCCTCATATGAGCAGG
TGATGATCGCTGCTACTACATAAAAACTTGACAGTAAGTAGATCATTACG
CAGCCTCAGCAAAGCCGATCCGGAGCTTACCAGAGTCGAAAACAGTGTGA
TAAACCCCCATGAATACATCTCCCAGAATCCACAGAGGACCCCTTGGAGG
AGGCAGGTCGAAAGCCATGAAGCCACTGATGCAGACTTCTGCAATCCCTT
CTCCGGTTTTCAGAATATACTGCTCTGGAGAGAGGTTGAAAATTTTGTCT
CCGATGGTGAATGAAACATTTGGCATGGTTGGAATGCGACCACAGTCAAT
AATTGATTCTCCCATCGGATTTGGCAGGCTGTCGCAGAGCTCATTTATAT
AACTGAGTACTTTCTCCTTTGTTTGCTTTTGTTTTAGCTGATTCTGGACC
CAAACCACGGTCATTTCACAAGCACTGCACACAGCACTATCCCCGGCTGA
TACGTTTTCCTTCTCAACCACGGTCTTGATC
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