EY664844

Overview
NameEY664844
Unique NameEY664844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664844 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 5.090e-18
Identity = 54/216 (25.00%), Postives = 112/216 (51.85%), Query Frame = 3
Query:   12 LLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS--AEKAYHEQLSVAEITNSAFEPSSMM--AKCDPRHGK-YMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVADVFSRIDHKFDLMYAKRAFVHWYVGEGM 644
            +LDN A+  I    L I+ PT+T +N LVS ++S  T +LR+   +N ++     +L+P P++HF+++ Y P++S    K    + +V ++     +P +MM  A  D +  + +++   + +G+V P  V+ ++  I+ ++   F+ W P   +  +    P V     ++ +     M++N T ++ +F R   ++D +  + AF+  +  E M
Sbjct:  204 VLDNTALNRIATERLHIQTPTFTQINNLVSTIMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNMMVSALTDKQSRQCFVSILNIIQGEVDPSQVHKSLQRIRERKLANFIPWGPASIQVALPRSSPYVQSAHKVSGL-----MMANHTGISSLFKRALAQYDKLRKRNAFLDNFRRESM 414          
BLAST of EY664844 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.350e-17
Identity = 52/221 (23.53%), Postives = 114/221 (51.58%), Query Frame = 3
Query:   12 LLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHE------QLSVAEITNSAFEPSSMMAKC-----DPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVADVFSRIDHKFDLMYA----KRAFVHWY 629
            +LDN A+  I    L + +P    +N L++ V+++ T +LR+ G +N D+     +L+P PR HF+++ Y P ++AE A  +      + +V ++     +P ++M        D  + KY++   + +G+V P  V+ ++  I+ ++   F++W P   +  ++ + P V     ++ +     M++N TSV  +F+++   ++ +      ++AF+  Y
Sbjct:  204 VLDNTALDKIAVERLHLHKPDVQQINSLIATVMAASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTP-LTAENAAGQVTSNIRKTTVLDVMRRLLQPKNIMVSTHTKSRDIANAKYISILNIIQGEVDPSQVHKSLQRIRERKQANFIEWGPASIQVALSKKSPYVQTAHRVSGL-----MLANHTSVRHLFNKVLRDYEKLMGPKQERQAFMQAY 418          
BLAST of EY664844 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.350e-17
Identity = 57/208 (27.40%), Postives = 102/208 (49.04%), Query Frame = 3
Query:   12 LLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS----AEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVADVFSRIDHKFDLMYAKRAFVH 623
            L DN+A+ ++  R L     +Y   N+L++ V+SS+T SLRF   +   +    + LVP P +HF+  S+ P  S      K + ++LS  ++    F+ ++ M   D     Y+A     +G V   DV  A+  +KT++ I+F  W PT     +  + P             +  M++N++S+  VF +    FD+++ + AF+H
Sbjct:  204 LFDNDALLNLTARVLRDSNTSYQQTNQLIASVMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDF-KRLSAYDVILDLFDKNNSMVTRDTDTPVYLAIYDALQGAVEQSDVTRAI--LKTQQRIKFAPWSPTSLHVNLGRKSPY---NSSANSDYVSGMMLANTSSIVSVFQKTVSSFDVIFKRGAFLH 405          
BLAST of EY664844 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.350e-17
Identity = 50/208 (24.04%), Postives = 103/208 (49.52%), Query Frame = 3
Query:   12 LLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH--EQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVADVFSRIDHKFDLMYAKRAFVHWY 629
            +LDN AI  I    L +  PT + +N +VS V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P+   ++      + +V ++     +  ++M     + G YM+   + +GDV P  V+ ++  I+ +    F+ W P   +  ++ + P +     ++ +     M++N T +  +F  +  ++     + AF+  Y
Sbjct:  201 VLDNTAITSIAVDRLKLLHPTISQVNSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLNDQKVSSIRKTTVLDVMRRLLQTRNIMTSGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERNVANFIPWGPASIQVALSKKSPYIESDNKVSGL-----MLANHTGIRSIFQVLYGQYRQFRKRDAFLGTY 403          
BLAST of EY664844 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.174e-12
Identity = 50/209 (23.92%), Postives = 100/209 (47.85%), Query Frame = 3
Query:   12 LLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS---AEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVADVFSRIDHKFDLMYAKRAFVHWY 629
            + DN ++ +I  +          + N+L+S +ISS+T S+RF   +   ++   + L+P P +HF+  S+ P  S    +   H+  S  ++     +PS+ +      +  Y        G+V P+ ++ A+   K ++ I+F  W  +     I  + P +    +  +V  +  M+SN ++V +VF    + FD ++AK AF++ Y
Sbjct:  203 VFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTSDYIHDDIAHKGHSSYDVMLDLLDPSNSLVSTAMNNPTYFNVYNTIIGNVEPRQISRAMT--KLQQRIKFPSWSSSAMHVNIGRRSPYLPLQPNENEV--SGMMLSNMSTVVNVFENACNTFDKVFAKGAFLNNY 407          
BLAST of EY664844 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.705e-11
Identity = 54/219 (24.66%), Postives = 99/219 (45.21%), Query Frame = 3
Query:   12 LLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA-YHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCL-MYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF-----KCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVADVFSRIDHKFDLMYAKRAFVHWYVGEGME 647
            ++DN ++      SL I  PT+ ++N L+S V+++ T+++RF G +          LVP   + F++ SY P +  E +    + + +++      P + +A  +    + +   L +  G     +V+  V     K  + FV W P  F     KC  N   P+ V G            ++NST  + + S+I  +FD +  +RAF+  Y   G+E
Sbjct:  197 VMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAASTSTIRFPGYMYCTHQSINNCLVPLDPLKFVVPSYTPFVCDEMSRVVRKATCSDVMRRLLLPKTRLAGYEQTKAQSVVSMLNILHGVEDSGEVSRTVMRFLDKGMVNFVPWMPPSFNVALGKCIANETRPSRVSG----------LSLTNSTGASLILSKISGQFDKLRKQRAFLDIYKRFGVE 405          
The following BLAST results are available for this feature:
BLAST of EY664844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 416
Match NameE-valueIdentityDescription
TBG2_DROME5.090e-1825.00Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBG_CHLRE7.350e-1723.53Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]
TBG_ASHGO7.350e-1727.40Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]
TBG2_EUPCR7.350e-1724.04Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_YEAST4.174e-1223.92Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBG_ENCCU2.705e-1124.66Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-B03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664844 ID=EY664844; Name=EY664844; organism=Citrus sinensis; type=EST; length=935bp
CCACGCGTCCGCTTCTCGACAATGAGGCCATTTATGACATCTGCAGGCGC
TCCCTTGACATTGAACGTCCTACCTATACTAACCTCAATAGACTTGTTTC
TCAGGTAATTTCTTCATTGACTGCCTCACTGAGGTTTGATGGTGCTTTGA
ATGTGGATGTGACTGAATTCCAAACCAACTTGGTCCCATACCCAAGAATC
CACTTCATGCTTTCCTCCTATGCACCAGTCATCTCAGCTGAGAAGGCCTA
CCATGAACAACTCTCAGTTGCTGAGATCACCAACAGTGCCTTTGAGCCCT
CATCTATGATGGCCAAATGTGATCCTCGTCATGGCAAGTACATGGCTTGC
TGCCTTATGTACCGCGGTGATGTTGTGCCCAAGGATGTCAATGCAGCTGT
TGCTACCATCAAGACCAAGCGTACAATCCAATTCGTCGACTGGTGCCCGA
CTGGGTTCAAGTGTGGTATCAACTACCAGCCACCAACTGTTGTTCCTGGT
GGTGACCTTGCCAAGGTGCAGAGGGCTGTTTGCATGATCTCCAACTCCAC
CAGTGTGGCAGATGTGTTCTCTCGCATTGACCACAAGTTTGATCTTATGT
ATGCAAAGCGTGCTTTCGTCCACTGGTATGTTGGCGAGGGTATGGAAGAA
ANGAGAGTTCTCTGAGGCTCGTGAGGATCTTGCTGCCCTTGAAANGATTA
TGAGGGAGGTGGTGCANAGTCTGCCGAGGGTGAGGAAGATTATGGTGAGG
AGGACTAAGGGATTTAAGTGTGAATTATCTGGGCGTTTAATATGATGTCT
TGGCCTTTATGATGCTTCGTGCCTTTATTTGGGATGAAACCCTATTCTTG
ATCTCGCTCAATTCAAAGCTTGGTGAAATTGGTATGCCTATTCAAAAAAA
AAAAAAAAAAAAAAAAAAGGGCGGCCCTCTAAAGG
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