CX672515

Overview
NameCX672515
Unique NameCX672515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UBC33_ARATH (Probable ubiquitin carrier protein E2 33 OS=Arabidopsis thaliana GN=UBC33 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.061e-13
Identity = 38/115 (33.04%), Postives = 60/115 (52.17%), Query Frame = -2
Query:  320 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICL---DILKEQWSPALTISKVLLSICSLLTDPNP 655
            KR+ KE + L K+P +   A P   D+  W   + G   +P+AGG +   I FPP+YP+KPP +   T   +    +  +ICL   D   E W+P  ++S +L  + S + D +P
Sbjct:    8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTP--NGRFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSP 120          
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.820e-13
Identity = 35/107 (32.71%), Postives = 57/107 (53.27%), Query Frame = -2
Query:  263 DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICLDIL--------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 541
            DS YAG +    + FP  YP +PP + F +K+FHPNI  +G++C+ IL              K++W+P   I  +++SI  +L  PN   P   + + MY+ +  +Y
Sbjct:   77 DSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEY 183          
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UBC17_CAEEL (Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.385e-12
Identity = 46/122 (37.70%), Postives = 65/122 (53.28%), Query Frame = -2
Query:  347 SKRILKELKDLQKDPPTSCSAGPVA------EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGRICLDIL-------KEQWSPALTISKVLLSI 658
            +KRI KEL  +    P + S            D+   +  I GP D+PYA G+F   I FP  YPF PPK AF T       F+PN+ ++G+ICL IL       +E+W+P  ++ +VL+SI
Sbjct:  411 TKRIAKELASIANALPLNASNSIYVCYDEGRVDII--KVLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVLVSI 530          
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UB2J2_MOUSE (Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus GN=Ube2j2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12
Identity = 39/142 (27.46%), Postives = 70/142 (49.30%), Query Frame = -2
Query:  245 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICL---DILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARS 661
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +PY GG +   + FP ++PFKPP +   T   +     N R+CL   D   + W+PA ++S +L  + S + +        P +  +  SD  K +  A+S
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKG------PTLGSIETSDFTKKQLAAQS 146          
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UB2J2_BOVIN (Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus GN=UBE2J2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12
Identity = 39/142 (27.46%), Postives = 70/142 (49.30%), Query Frame = -2
Query:  245 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICL---DILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARS 661
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +PY GG +   + FP ++PFKPP +   T   +     N R+CL   D   + W+PA ++S +L  + S + +        P +  +  SD  K +  A+S
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKG------PTLGSIETSDFTKRQLAAQS 146          
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UB2J2_HUMAN (Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 34/117 (29.06%), Postives = 61/117 (52.14%), Query Frame = -2
Query:  320 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICL---DILKEQWSPALTISKVLLSICSLLTDPNP 661
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +PY GG +   + FP ++PFKPP +   T   +     N R+CL   D   + W+PA ++S +L  + S + +  P
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UBC12_CAEEL (NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 43/136 (31.62%), Postives = 63/136 (46.32%), Query Frame = -2
Query:  230 PPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKY 616
            P TSC          H     + P +  Y GG F   I  PP+Y   PP V   TKV+HPNIN +G ICL IL++       W P   ++ V+  + SL  D  + +D L  + A M+  ++  +    R +  +Y
Sbjct:   53 PSTSC---------LHELELTVTPQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREYISRY 179          
The following BLAST results are available for this feature:
BLAST of CX672515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC33_ARATH3.061e-1333.04Probable ubiquitin carrier protein E2 33 OS=Arabid... [more]
Y1A1_ENCCU6.820e-1332.71Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC17_CAEEL3.385e-1237.70Probable ubiquitin-conjugating enzyme protein 17 O... [more]
UB2J2_MOUSE9.848e-1227.46Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus... [more]
UB2J2_BOVIN9.848e-1227.46Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus G... [more]
UB2J2_HUMAN1.286e-1129.06Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens... [more]
UBC12_CAEEL2.865e-1131.62NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17D12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17D12-G23-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672515 ID=CX672515; Name=CX672515; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTAGGACAACAAACTACATTGAATGATAGGAGTTTCAAACAATAAA
CATTCAACATTAACAAAATCGTCTTGCCCTTGCAACTCCTCCCCAAACAT
CCTTCCTCATTACTAAAATACAAAACATCCCCTTCCCGAAGCAAGATTGA
AGAAAAAGGAGAAAAAAACACAACATATTTCATATAAATGAGTTCCATTT
CTGCAATATCCAAACAACTATCCCATGGCATACTTCTGTGTCCAGCTCCT
GGCAGTGGCTTCATATTTGGCCTTGTCGGACTTGTACATGTGAGCAATCT
CCGGTACAAGCGGGTCGTCAGGATTTGGGTCAGTAAGCAACGAGCAGATA
GAAAGCAGGACCTTTGAAATGGTAAGAGCTGGGCTCCACTGTTCTTTAAG
GATATCAAGACATATTCTTCCATTGCTGTTGATGTTTGGGTGGAAGACCT
TGGTCCTAAAAGCAACCTTTGGGGGCTTGAAGGGATAATCTGGAGGAAAA
TGAATGGTAACCAAAAATACACCTCCTGCATATGGACTATCAGGGGGGCC
CATAATTGTTGCTTGCCAATGGAACATGTCTTCAGCCACCGGACCAGCGC
TGCAAGACGTGGGAGGATCCTTCTGCAAATCCTTGAGTTCCTTCAAAATA
CGCTTCGAAGCCATGATGCTTCAACGGATTATTAAAAGTTAAAGCCACAA
CAAACCTAGGATCTTGTGCGGCGAAGAAGGAGATCGGAGGGCAATAGCAG
TGAGAAAGGGGAACGGCTTCGGAGCAGATCTGCGGCGGCTACTGGCCGTC
CCGACCTCTCTCCCT
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