CX672515

Overview
NameCX672515
Unique NameCX672515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.846e-35
Identity = 70/144 (48.61%), Postives = 97/144 (67.36%), Query Frame = -2
Query:  224 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 655
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  GRICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KS++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYAM 149          
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.846e-35
Identity = 71/143 (49.65%), Postives = 97/143 (67.83%), Query Frame = -2
Query:  227 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 655
            KRI+KE + L  +P    SA P  ++  +++  I GP DSP+ GGVF + +    DYP   PKV F TK++HPNI+  GRICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++ +  A AR WT+ YA
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.339e-35
Identity = 69/144 (47.92%), Postives = 97/144 (67.36%), Query Frame = -2
Query:  224 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 655
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  GRICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.339e-35
Identity = 69/144 (47.92%), Postives = 97/144 (67.36%), Query Frame = -2
Query:  224 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 655
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  GRICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.339e-35
Identity = 69/144 (47.92%), Postives = 97/144 (67.36%), Query Frame = -2
Query:  224 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 655
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  GRICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.339e-35
Identity = 69/144 (47.92%), Postives = 97/144 (67.36%), Query Frame = -2
Query:  224 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 655
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  GRICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.279e-35
Identity = 67/133 (50.38%), Postives = 88/133 (66.17%), Query Frame = -2
Query:  263 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 661
            A KR++ + K LQKDPP   S  P   ++ HW A I GP D+P+ GG F +T+HF  DYP KPP V F +++FHPNI ++G ICLDIL+ QWSP   ++ VL SI SLL DPNPD P   E A ++  +K +Y
Sbjct:    5 AKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREY 137          
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.412e-34
Identity = 67/144 (46.53%), Postives = 97/144 (67.36%), Query Frame = -2
Query:  224 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 655
            KRI+KE++ L +DPP    A P  +++ +++ T+ GP  S Y GG F + +  P +YP  PP V F TK++HPN++  GRICL  LK+ WSPAL I  VLLSI +L+  PNPDDPL  ++A ++K ++ +  A AR WT+KYA+
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYAV 148          
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.366e-34
Identity = 69/143 (48.25%), Postives = 95/143 (66.43%), Query Frame = -2
Query:  227 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 655
            KRI+KE + L  DP    +A P  +++ ++Q TI GP  SPY  G+F + ++ P DYP + PKV F TK++HPNI+  GRICLD+LK  WSPAL I  VLLSI +LL  PNP+DPL  ++A  +  ++   +A AR WT+ YA
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148          
BLAST of CX672515 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.009e-34
Identity = 69/149 (46.31%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  239 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGRICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSWT 670
            S  A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +T+ F  DYP KPP V F +++FHPNI ++G ICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY  +K +Y     E   +SWT
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWT 150          
The following BLAST results are available for this feature:
BLAST of CX672515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2N_RAT2.846e-3548.61Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_DICDI2.846e-3549.65Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2N_PONAB6.339e-3547.92Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE6.339e-3547.92Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN6.339e-3547.92Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN6.339e-3547.92Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC3_ARATH8.279e-3550.38Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC13_SCHPO1.412e-3446.53Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC13_YEAST5.366e-3448.25Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC2_WHEAT7.009e-3446.31Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17D12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17D12-G23-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672515 ID=CX672515; Name=CX672515; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTAGGACAACAAACTACATTGAATGATAGGAGTTTCAAACAATAAA
CATTCAACATTAACAAAATCGTCTTGCCCTTGCAACTCCTCCCCAAACAT
CCTTCCTCATTACTAAAATACAAAACATCCCCTTCCCGAAGCAAGATTGA
AGAAAAAGGAGAAAAAAACACAACATATTTCATATAAATGAGTTCCATTT
CTGCAATATCCAAACAACTATCCCATGGCATACTTCTGTGTCCAGCTCCT
GGCAGTGGCTTCATATTTGGCCTTGTCGGACTTGTACATGTGAGCAATCT
CCGGTACAAGCGGGTCGTCAGGATTTGGGTCAGTAAGCAACGAGCAGATA
GAAAGCAGGACCTTTGAAATGGTAAGAGCTGGGCTCCACTGTTCTTTAAG
GATATCAAGACATATTCTTCCATTGCTGTTGATGTTTGGGTGGAAGACCT
TGGTCCTAAAAGCAACCTTTGGGGGCTTGAAGGGATAATCTGGAGGAAAA
TGAATGGTAACCAAAAATACACCTCCTGCATATGGACTATCAGGGGGGCC
CATAATTGTTGCTTGCCAATGGAACATGTCTTCAGCCACCGGACCAGCGC
TGCAAGACGTGGGAGGATCCTTCTGCAAATCCTTGAGTTCCTTCAAAATA
CGCTTCGAAGCCATGATGCTTCAACGGATTATTAAAAGTTAAAGCCACAA
CAAACCTAGGATCTTGTGCGGCGAAGAAGGAGATCGGAGGGCAATAGCAG
TGAGAAAGGGGAACGGCTTCGGAGCAGATCTGCGGCGGCTACTGGCCGTC
CCGACCTCTCTCCCT
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